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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G52140 | AT | Annotation by Michelle Graham. TAIR10: tetratricopeptide repeat (TPR)-containing protein | chr3:19333232-19341295 FORWARD LENGTH=1407 | SoyBase | E_val: 0 | ISS |
| GO:0006094 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gluconeogenesis | SoyBase | N/A | ISS |
| GO:0007010 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytoskeleton organization | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0010498 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteasomal protein catabolic process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| KOG1839 | KOG | Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 | JGI | ISS | |
| PTHR12601 | Panther | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT (EIF-3) | JGI | ISS | |
| PF05303 | PFAM | Protein of unknown function (DUF727) | JGI | ISS | |
| UniRef100_B9RHH9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Eukaryotic translation initiation factor 3 subunit, putative n=1 Tax=Ricinus communis RepID=B9RHH9_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233AB8B | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233AB8B related cluster n=1 Tax=unknown RepID=UPI000233AB8B | SoyBase | E_val: 0 | ISS |
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Glyma15g42670 not represented in the dataset |
Glyma15g42670 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma08g16180 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g271800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g42670.1 sequence type=CDS gene model=Glyma15g42670 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTGGAAAATCGGGCAAGGGGAGGAACAGAAAAGGGTCCCATAATGCGTCCAGTGCTTCAGAACCTCCAGTCCATTCCAATGTTCCTGTGAAGGATAATGTGGAAGTCACTTTGGAATCAGCAAAAACTGATGCAGCTGATGCTGCAGGCAACTCTACTGTTGCCAATCCCGAGGTGAAGGAGAATGAAACAACAACTGAAGGGAGCCAACAAAAGCAGGGTGATCTTCAACTTTACCCTGTTTCTGTTAAAACCCAAACTGGGGAGAAGCTTGAGCTTCAGTTGAATCCTGGAGACTCTGTCATGGATGTTAGACAGTTCCTCCTTGATGCTCCTGAGACATGTTTTATTACATGCTATGATTTACTTTTGCATACGAAGGATGGATCCACTCATCACCTGGAAGATTATAATGAAATTTCTGAAGTAGCTGATATTACTACTGGTGGCTGCTCCTTGGAAATGGTTCCTGCATTTTATGATGATCGATCTATAAGGGCCCATGTTCATCGTACAAGGGAGTTGCTTTCCCTTTCTAACCTCCATGCTTCACTATCGACATCACTTGCCCTACAGAATGAGATAGCACAAAATAAAGGTGCAAATTCAGGAGATACCTTGAAACCTGAAGTTCCTGAGCTTGATGGGCTTGGTTATATGGAGGACATCTCTGGTTCATTGGGTAATTTATTATCGTCCCCATTGAAGGATATTAAATGTGTTGAGAGCATAGTGTTTTCATCCTTTAATCCTCCTCCGAGCTATAGAAGGCTTGTTGGAGATTTAATTTATTTGGATGTGGTCACTCTTGAGGGAAACAAATTTTGCATTACGGGGAGTACAAAAATGTTTTATGTCAACTCAAGCTCAGCAAACAATCTTGACCCAAGGCCAAGTAAAGCTACTTTTGAAGCAACAACTCTTGTTGCTCTCTTACAGAAGATTAGCCCCAAGTTCAAAAAAGCTTTCCGTGAAGTATTGGAGGGTAGAGCAGCTGCCCATCCTTTTGAAAATGTGCAATCTTTGTTGCCACCTAATTCTTGGCTTGGATTATACCCTGTTCCTGACCACAGACGTGATGCAGCCAGGGCTGAGAATGCTTTGACTCTTCTTTATGGCAATGAGCCAATTGGCATGCAAAGAGACTGGAATGAAGAGCTGCAGTCTTGTAGAGAATTTCCTCATACATCTCCTCAGGAGAGGATTTTGCGGGATAGGGCACTTTATAAAGTGACATCAGACTTTGTTGATGCAGCTATTAATGGTGCTATTGGAGTGATCAGTGGTTGCATTCCTCCGATAAACCCAACTGACCCTGAATGCTTTCACATGTATGTGCACAACAATATATTCTTTAGTTTTGCTATTGATGCTGACCTTGAGAAGCTGCCAAAGAAACGTGTGGATGCTAATTCAAAATCTTGGAGCTCCAGCACTTTGCAAAGTTCTTCTGATAAAGATTCCATTCCACTTCATGGAGAAAGTCAGGTTCCTAATGGGGGTAAAGATGACAGTTCAAGTTCAGAAGATCTTAATGGCACAGAAATTACTCAAGATGTTTCTCCAGAAGCTCAGCTGGCTGAGAATGAGCAAGCCACATATGCTTCTGCAAACAATGATTTGAAGGGCACAAAGGCTTACCAAGAAGCTGATGTTCCTGGACTTTATAATCTTGCTATGGCTATAATTGACTACAGGGGTCATAGAGTGGTAGCTCAGAGTGTCTTACCAGGCATTCTTCAAGGGGACAAGTCAGACTCTCTCTTGTATGGCTCTGTTGACAATGGAAAGAAAATTTGCTGGAATGAAGATTTTCATTCTAAGGTGTCAGAGGCTGCCAAATGCCTTCATTTGAAGGAACATTTAGTCCTTGATGGATCTGGAAATCTTTTCAAATTAGCTGCACCAGTGGAATGCAAGGGCATTGTTGGTGGTGATGACCGACATTATCTTCTTGATTTGTTGAGAGTAACTCCTCGTGATGCCAACTATACTGGACCTGGTTCCCGATTTTGTATCTTGAGACCAGAATTAATTACTGCCTATTGCCAGGCCCAAGCAGCAGAGGCATTGAAATCTAAGGAGAAGAATTTTCAAGAGGCAAACAGTTTGGCCACTGAATCCCAAAATGCTGCTGAAGCTGACCAGCTGGTAAATGATTCCCAAAATGCTGCTGATGCTGACAAGCTGGATTCAACAAAGGAAGAAAAAGCTGAGGATGTTAAAGAGCTTGCTTCTGTGATTGCCAAAGCCTCTGATGGTTGTGAGGATATTGTTTTTAATCCTAATGTCTTCACTGAATTCAAACTTGCTGGGAGTCCAGAGGAAATAGCAGCTGATGAAGATAATGTTAGAAAAGTTAGTCAATATCTTACAGATGTGGTACTTCCAAAGTTTATACAAGACCTATGTACACTTGAAGTTTCGCCAATGGATGGCCAGACATTAACTGAAGCATTGCATGCTCATGGAATTAATGTTCGTTATATTGGCAGAGTGGCTGGGGGGACTAAACATCTACCTCATCTGTGGGATCTTTGTAATAGTGAGATTGTTGTCAGATCTGCTAAGCATATTATCAAGGATTTATTGAGAGAGACAGAGGACCATGATCTTGCACCAGCAGTATCTCATTTCTTAAATTGCCTATTTGGAAGTTGTCAAGCTCCCAGTGGAAAAGTTCCTGCTAATAGCACGCAGTCCAACACTCCTAAAAAGGAACATGCAGGGCAACGGTCTCCAGGGAAACATTCCAAAGGGCTAGCTCGGTGGAAAGGCAGGGCATCTTTAAGAAAGACTCAACCTTTGTATGCAAGTATCAGCTCGGAAGCTCTTTGGTTAGACATTCAAGAATTTGCAATGGTTAAATATAAGTTTGAATTGCCAGCAGATGCTAGGTCGCGTGTCAAGAAAATTTCTCTTATACGTAATCTCTGTCTGAAGGTTGGTATAACTGTTGCAGCTCGTAAATATGATCTTAGTTCTGCAACTCCCTTCCAAACATCAGATGTCTTAGATCTCCGTCCGGTTGTCAAGCATTCAGTTCCTGCCTGTTCAGAAGCCAAGGAACTTGTGGAAACTGGAAAACTTCAATTGGCTGAGGGCATGCTCAGTGAAGCCTACACTTTATTCTCCGAGGCATTCTCGATTCTACAACAGGTGACTGGTCCCATGCATCGGGAGGTTGCTAATTGCTGTCGGTATCTTGCCATGGTTTTGTATCATGCTGGAGATATGGCTGGGGCTATTATGCAACAACACAAGGAGCTAATTATAAATGAACGTTGTCTTGGTCTAGATCATCCTGACACTGCTCACAGTTATGGAAATATGGCTCTGTTCTACCATGGCCTTAACCAGACAGAACTTGCACTTCGCCATATGTCCCGTGCTTTTCTATTATTAAGTTTGTCATCGGGGCCAGATCATCCTGATGTTGCAGCAACATTTATCAATGTTGCAATGATGTATCAGGATATAGGAAAGATGAACACAGCTCTTCGTTATCTGCAAGAAGCTTTAAAGAAGAATGAAAGGCTTCTTGGCGAGGAACATATTCAAACTGCTGTTTGTTATCATGCTCTGGCTATTGCATTTAATTGTATGGGTGCTTTCAAGCTCTCTCACCAGCATGAGAAGAAAACATATGATATACTTGTCAAACAACTTGGTGAAGATGATTCAAGGACACGGGATTCGCAGAATTGGATGAACACATTTAAGATGCGTGAGCTGCAGATGAATGCTCAAAAGCAAAAGGGTCAAACTCTGAATGCAGCTTCAGCTCAGAAGGCTATTGATATCTTGAAGGCTCATCCCGATTTGATGCATGCATTCCAAGCTGCCGCAATTGCTGGAGGATCTGGAAGTTCAGGTGCATCTGCTAACAAATCCCTCAATGCTGCAGTAATGGGTGAGGCACTTTCCAGAGGAAGGGGAATTGATGAAAGAGCTGCACGTGCAGCTGCCGAAGTCAGGAAAAAGGCTGCAGCAAGGGGCCTGTCGGTTCGTCCCCACGGTGTACCAGTCCAATCCTTGCCACCCCTTACCCAACTTCTGAATATTATAAATTCAGGTGTGACTCCAGATGCAGTGGACAATGGGAATGCAGACGGAGCAAAGAAGGAAGCAAATGACATTCCTCCAAGTGATTCAATTGATGCCAAGAAAGGCCAAACAATGCCTGTGCAAGAACAGGAACATGCTCCAGTTGGATCACATTCTCCGGTTGGACTAGGCAAGGGCTTGTCATCATTGGATGCTAAGAAACAAAAATCGAAACCAAAGGCTGGGGCTTGA
>Glyma15g42670.1 sequence type=predicted peptide gene model=Glyma15g42670 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAGKSGKGRNRKGSHNASSASEPPVHSNVPVKDNVEVTLESAKTDAADAAGNSTVANPEVKENETTTEGSQQKQGDLQLYPVSVKTQTGEKLELQLNPGDSVMDVRQFLLDAPETCFITCYDLLLHTKDGSTHHLEDYNEISEVADITTGGCSLEMVPAFYDDRSIRAHVHRTRELLSLSNLHASLSTSLALQNEIAQNKGANSGDTLKPEVPELDGLGYMEDISGSLGNLLSSPLKDIKCVESIVFSSFNPPPSYRRLVGDLIYLDVVTLEGNKFCITGSTKMFYVNSSSANNLDPRPSKATFEATTLVALLQKISPKFKKAFREVLEGRAAAHPFENVQSLLPPNSWLGLYPVPDHRRDAARAENALTLLYGNEPIGMQRDWNEELQSCREFPHTSPQERILRDRALYKVTSDFVDAAINGAIGVISGCIPPINPTDPECFHMYVHNNIFFSFAIDADLEKLPKKRVDANSKSWSSSTLQSSSDKDSIPLHGESQVPNGGKDDSSSSEDLNGTEITQDVSPEAQLAENEQATYASANNDLKGTKAYQEADVPGLYNLAMAIIDYRGHRVVAQSVLPGILQGDKSDSLLYGSVDNGKKICWNEDFHSKVSEAAKCLHLKEHLVLDGSGNLFKLAAPVECKGIVGGDDRHYLLDLLRVTPRDANYTGPGSRFCILRPELITAYCQAQAAEALKSKEKNFQEANSLATESQNAAEADQLVNDSQNAADADKLDSTKEEKAEDVKELASVIAKASDGCEDIVFNPNVFTEFKLAGSPEEIAADEDNVRKVSQYLTDVVLPKFIQDLCTLEVSPMDGQTLTEALHAHGINVRYIGRVAGGTKHLPHLWDLCNSEIVVRSAKHIIKDLLRETEDHDLAPAVSHFLNCLFGSCQAPSGKVPANSTQSNTPKKEHAGQRSPGKHSKGLARWKGRASLRKTQPLYASISSEALWLDIQEFAMVKYKFELPADARSRVKKISLIRNLCLKVGITVAARKYDLSSATPFQTSDVLDLRPVVKHSVPACSEAKELVETGKLQLAEGMLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRAFLLLSLSSGPDHPDVAATFINVAMMYQDIGKMNTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEDDSRTRDSQNWMNTFKMRELQMNAQKQKGQTLNAASAQKAIDILKAHPDLMHAFQAAAIAGGSGSSGASANKSLNAAVMGEALSRGRGIDERAARAAAEVRKKAAARGLSVRPHGVPVQSLPPLTQLLNIINSGVTPDAVDNGNADGAKKEANDIPPSDSIDAKKGQTMPVQEQEHAPVGSHSPVGLGKGLSSLDAKKQKSKPKAGA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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