SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G48030 | AT | Annotation by Michelle Graham. TAIR10: gametophytic factor 2 | chr5:19466298-19469753 REVERSE LENGTH=456 | SoyBase | E_val: 0 | ISS |
| GO:0000740 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nuclear membrane fusion | SoyBase | N/A | ISS |
| GO:0000741 | GO-bp | Annotation by Michelle Graham. GO Biological Process: karyogamy | SoyBase | N/A | ISS |
| GO:0006457 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein folding | SoyBase | N/A | ISS |
| GO:0009553 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo sac development | SoyBase | N/A | ISS |
| GO:0009558 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo sac cellularization | SoyBase | N/A | ISS |
| GO:0009560 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo sac egg cell differentiation | SoyBase | N/A | ISS |
| GO:0010197 | GO-bp | Annotation by Michelle Graham. GO Biological Process: polar nucleus fusion | SoyBase | N/A | ISS |
| GO:0010198 | GO-bp | Annotation by Michelle Graham. GO Biological Process: synergid death | SoyBase | N/A | ISS |
| GO:0051085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chaperone mediated protein folding requiring cofactor | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0031072 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: heat shock protein binding | SoyBase | N/A | ISS |
| GO:0051082 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: unfolded protein binding | SoyBase | N/A | ISS |
| KOG0715 | KOG | Molecular chaperone (DnaJ superfamily) | JGI | ISS | |
| PTHR24076 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24076:SF80 | Panther | JGI | ISS | ||
| PF00226 | PFAM | DnaJ domain | JGI | ISS | |
| PF00684 | PFAM | DnaJ central domain (4 repeats) | JGI | ISS | |
| PF01556 | PFAM | DnaJ C terminal region | JGI | ISS | |
| UniRef100_I1MJL8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Chaperone protein DnaJ 19 n=1 Tax=Glycine max RepID=I1MJL8_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MJL8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Chaperone protein DnaJ 19 n=1 Tax=Glycine max RepID=I1MJL8_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma15g42640 not represented in the dataset |
Glyma15g42640 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma08g16150 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g271500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g42640.1 sequence type=CDS gene model=Glyma15g42640 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATTCGCTCCAATGGCGTCAGGCTCCTTCGATCGCTGCCCGAAAAACTCCTCCGCCACGCCAACGAACGCATATACGAAGGAATGTGCCAATGGGGTTATAGGACATTGAGTTCAGGTCTTTGTAATCCATCCAGAGTTATTGGGAACTTATCTCCAAATGTTGGAAATGGTGGTAATTTGAAGAACTATTTGCTTTTTGGAGCCGCAAATACATATTGGGGGACATCTAGATCCATTCATGGGTCAGCATCATTGGCAAGGGACTATTACGAAGTGCTTGGTGTGAGTAAGAATGCGAGTTCTTCTGAAATAAAGAAAGCATACTATGGGCTTGCAAAGAAGCTCCATCCAGACACAAACAAAGATGATCCTGAGGCCGAAAAGAAGTTTCAAGAAGTTTCAATGGCATATGAGGTTTTGAAGGATGAGGAAAAACGCCAACAGTATGATCAGGTTGGCCATGATGCATATGTAAACCAAGAAAGCACCAATGGTTTTGGAGGCAACAGTGGCTTTAATCCATTTGAGCAGATGTTCCGTGATCATGATTTTGTCAAGAGCTTTTTTCATCAGAATATTGGTGGAGAAGATGTCAAGACTTTTATTGAACTATCTTTTATGGAAGCTGTCCGGGGATGCAATAAAACTATTACATTTCAAACAGAAGTGCTTTGTAACACCTGTGGTGGAAGTGGTGTGCCTCCTGGTACAAGACCTGAAACCTGTAAGCGCTGTAAAGGGTCAGGAGTGACATATGTACAAACTGGCATATTTAGGATGGAGAGTACTTGTGGTACATGTAAGGGAACTGGCAAAATTGTATCGAATTTCTGCAAGTCATGTAAAGGTACAAAGGTTACCAAAGGAACAAAATCGGTCAAATTGGATATTATGGCTGGGATTGACAACAATGAAACTATAAAGGTTTATAGAAGTGGTGGTGCAGATCCTGATGGAGATAATCCTGGTGATCTTTATGTTACTATCAAGGTCAGGGACGATCCTGTCTTCCGTAGAGAAGGATCTAATATTCATGTAGATGCTATCTTAAGTATCACTCAGGCAATTTTGGGTGGAACCATTCAGGTCCCAACTCTTACTGGAGATGTTGTTCTAAAGATTCGTCCTGGCACCCAACCTGGTCAGAAGGTGGTTCTGAAAAAGAAAGGGATCAAGACAAAAAATTCTTACACATTTGGGGATCAATACGTTCATTTTAACGTCAGCATTCCAAACAATCTGACAGAGAGACAGCGTGAATTGATTGAAGAGTTTGCCAAGGAAGAGCAAGGAGATTTTGATAAACAGAGAGTTGCATCTGCTTCTGGTTGA
>Glyma15g42640.1 sequence type=predicted peptide gene model=Glyma15g42640 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MIRSNGVRLLRSLPEKLLRHANERIYEGMCQWGYRTLSSGLCNPSRVIGNLSPNVGNGGNLKNYLLFGAANTYWGTSRSIHGSASLARDYYEVLGVSKNASSSEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSMAYEVLKDEEKRQQYDQVGHDAYVNQESTNGFGGNSGFNPFEQMFRDHDFVKSFFHQNIGGEDVKTFIELSFMEAVRGCNKTITFQTEVLCNTCGGSGVPPGTRPETCKRCKGSGVTYVQTGIFRMESTCGTCKGTGKIVSNFCKSCKGTKVTKGTKSVKLDIMAGIDNNETIKVYRSGGADPDGDNPGDLYVTIKVRDDPVFRREGSNIHVDAILSITQAILGGTIQVPTLTGDVVLKIRPGTQPGQKVVLKKKGIKTKNSYTFGDQYVHFNVSIPNNLTERQRELIEEFAKEEQGDFDKQRVASASG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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