Report for Sequence Feature Glyma15g42460
Feature Type: gene_model
Chromosome: Gm15
Start: 49893624
stop: 49897919
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma15g42460
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G32850 AT
Annotation by Michelle Graham. TAIR10: Protein kinase superfamily protein | chr2:13935448-13937977 REVERSE LENGTH=670
SoyBase E_val: 0 ISS
GO:0006468 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein phosphorylation
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0004672 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein kinase activity
SoyBase N/A ISS
GO:0004674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity
SoyBase N/A ISS
GO:0005524 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ATP binding
SoyBase N/A ISS
GO:0016772 GO-mf
Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups
SoyBase N/A ISS
KOG1989
KOG
ARK protein kinase family
JGI ISS
PTHR22967 Panther
SERINE/THREONINE PROTEIN KINASE
JGI ISS
PTHR22967:SF47 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF00069 PFAM
Protein kinase domain
JGI ISS
UniRef100_B9REI2 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Serine/threonine protein kinase, putative n=1 Tax=Ricinus communis RepID=B9REI2_RICCO
SoyBase E_val: 0 ISS
UniRef100_UPI000233BFDD UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233BFDD related cluster n=1 Tax=unknown RepID=UPI000233BFDD
SoyBase E_val: 0 ISS
Expression Patterns of Glyma15g42460
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma15g42460
Paralog Evidence Comments
Glyma08g15921 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma15g42460 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.15g269800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma15g42460
Coding sequences of Glyma15g42460
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma15g42460.1 sequence type=CDS gene model=Glyma15g42460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTGGAGATTTAAGCCATTCAGTCACAAAGAACAGACTGGTCTTGAAGGCCGCACTATAGATGTTAGCAATCTTAAAATAAATATCATTAAGGCCATTGCCGAAGGAGGGTTCTCTTGTGTCTACCTAGCTCGAGATGCTGTACACATGTCAAAGCAATATGCTTTGAAGCACATGATATGCAATGACGAAGAATCACTTGGATTGGTAAAGAAGGAGATATCTGTGATGAAGATGCTGGCAGGACATCCCAATGTTGTCACACTTCATGCACATGCCATCGTTGATATGGGTAGGACGAAAGAAGCATTCGTTGTGATGGAATTTTGTGAGAGGTCTCTGGTTAATGTGCTGGAGAGCCGAGGAGCTGGTTATTTTGATGAGAAACAGGTTCTTTTGATCTTCAGGGATGTGTGTAATGCAGTTCTTGCCATGCACTGCCAGTCCCCACCTATTGCACACCGAGACTTGAAAGCAGAGAATCTTTTATTAGGTTCAGATGGCTTATGGAAGTTATGTGATTTTGGAAGCACTTCCACCAATCACAAACGTTTTGAGAAGCCAGAAGAAATGGGGATTGAGGAAGACAATATCAGGAAGTACACAACCCCTGCCTACAGGGCCCCTGAGATGTGGGATCTGTTCCTGAGAGAAGTCATTAATGAGAAGGTGGACATATGGGCACTTGGATGTCTCCTTTTTCGCATATGCTACTTCAAAAGTGCTTTTGATGGGGAATCAAAGCTCCAAGTCTTAAATGGAAACTACCGCATTCCCGAATTACCAAAATACACTTCACCTGTCACGGACTTGATAAGAGAAATGCTCCAAGCTAGACCAGATGACAGACCAGATATCACGCAGGTCTGGTTTCGTGTTAATGAGCAACTACCTATTAATTTACAGAAGTCGTTACCTGACAGACCACCTGAATCGCCCTCATCTAACAATCATGAAGGTGTGTCAATGCCCTCAAACAGATCACCTCCAATGCCTCGTAGGAACCCACCTCCTCCACCTTCATCTGGAGAACCCAAAACTTCACCACAACCACCCCCTGCTTCTAGGGGAGGGGGAAGTGGGGGTGCACTTGGTGCTTTCTGGTCCACTCAGCATGCAAAGGAATCACTTGTTGCTGAGGATAAGAGTAAACCAATTTTTGATGAAGAACCATCTAGCCACCATATTTCACCGAAACATGATAGGATTCTTCCTGAAAACGAACAGTTACCCAAAAATGTTGGTCCTAACAAAGTGGTTAACACACAAACTCATACCGTGAAAAGCAGTACACATGGAAAATTACACAAGCCTGATACTGTACCCTCCAAGGATTTTGAAATAAATTTGTTTAAGGATAAAGATCGCGTACGTGAGAGTACAACTAACTTTCAAAACCAGGCTTTTAACACTTTTGTTGCTGAATTTGATACTACTAATCTCAACTCTGGACTTAGTAACAAACCCGAAAGGGAACAAGCATTAGAGGCTGAGGTGGAGAAACTCAAAGAGCAGCTGAAGGAAGCTAACTTGGAAAAAGCTGAAATAACATCAAAGTATGAAAAGCTTTCTGCTATCTGCCGATCACAAAGGCAAGAACTGCAGGATCTGAAGCAAGCACTCACAGCTAGGACTCCTTCGCCAATTAGAGATGGTTTGAAAACCTCTCCTGCAGTTACATCATCTGCATCTGCATCTGCGAATAAGTCATGGCATGCTTTTCCAGAGGAACCTCAACAACAAAAGTCCTTCTCAGCTGAAAATACCTCCAAATCCGTCAGGGTGAAAAATGGTCAGCAGAACAAGCAACCTGTTGCACTAGCTACTGATTTTGATTCATGGGGTTTTGGATCAGATAGCTTCAGTGCTGTACCTGCTGGCAGCCCACACATGCAAAGACCTAGCAGTGCAGGAACAAAGTCTCAGGCTTTTGGTGAGGCAAACAAGTCAACTTCTCAACCAGCTGGATGGGCTGGTTTTTAA
Predicted protein sequences of Glyma15g42460
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma15g42460.1 sequence type=predicted peptide gene model=Glyma15g42460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MWRFKPFSHKEQTGLEGRTIDVSNLKINIIKAIAEGGFSCVYLARDAVHMSKQYALKHMICNDEESLGLVKKEISVMKMLAGHPNVVTLHAHAIVDMGRTKEAFVVMEFCERSLVNVLESRGAGYFDEKQVLLIFRDVCNAVLAMHCQSPPIAHRDLKAENLLLGSDGLWKLCDFGSTSTNHKRFEKPEEMGIEEDNIRKYTTPAYRAPEMWDLFLREVINEKVDIWALGCLLFRICYFKSAFDGESKLQVLNGNYRIPELPKYTSPVTDLIREMLQARPDDRPDITQVWFRVNEQLPINLQKSLPDRPPESPSSNNHEGVSMPSNRSPPMPRRNPPPPPSSGEPKTSPQPPPASRGGGSGGALGAFWSTQHAKESLVAEDKSKPIFDEEPSSHHISPKHDRILPENEQLPKNVGPNKVVNTQTHTVKSSTHGKLHKPDTVPSKDFEINLFKDKDRVRESTTNFQNQAFNTFVAEFDTTNLNSGLSNKPEREQALEAEVEKLKEQLKEANLEKAEITSKYEKLSAICRSQRQELQDLKQALTARTPSPIRDGLKTSPAVTSSASASANKSWHAFPEEPQQQKSFSAENTSKSVRVKNGQQNKQPVALATDFDSWGFGSDSFSAVPAGSPHMQRPSSAGTKSQAFGEANKSTSQPAGWAGF*