Glyma15g42450 - SoyBase

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Report for Sequence Feature Glyma15g42450

Feature Type:	gene_model
Chromosome:	Gm15
Start:	49877015
stop:	49887441
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g42450

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G13020	AT	Annotation by Michelle Graham. TAIR10: Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein \| chr5:4129691-4132089 REVERSE LENGTH=397	SoyBase	E_val: 4.00E-131	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0008284	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of cell proliferation	SoyBase	N/A	ISS
GO:0010413	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process	SoyBase	N/A	ISS
GO:0045492	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG4675	KOG	Uncharacterized conserved protein, contains ENT domain	JGI		ISS
PF03735	PFAM	ENT domain	JGI		ISS
UniRef100_G8Z280	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Hop-interacting protein THI115 n=1 Tax=Solanum lycopersicum RepID=G8Z280_SOLLC	SoyBase	E_val: 0	ISS
UniRef100_I1MJK1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MJK1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g42450

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g42450

Paralog	Evidence	Comments
Glyma08g15880	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g42450 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g269700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g42450

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g42450

Limit To All Plant Sequences

>Glyma15g42450.3   sequence type=transcript   gene model=Glyma15g42450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGTATGGCCGTTTGGGCGGGAGCTCTCTTAAAAACAAGGAGTCACCACTTAGTGTCCAATTCGACAAATTTGAGGCTCTACTCGACAGAACCACCCATAGTTCGATTCTACCTTCGAATTCCTCTTCGGCTTCGACTCTGCGTTCCTCGTACACTGTCCATTTCGCCGGAATCTTGGTTTTTGCGTTTTTTTTTTCTCTCTCCTGAATCTGGGTGCTTTCAATTTTGGTGCAAACTGGCTATGGACCACGAACCCTACGATAGTAGCGGAACTGATGATGATTTTCCACCAACACATCAAAATAGAATCCCCAGAGGAGCACATCTTGCAGGAAATGGAAGTGCAGTAGGTTCAATTCCATATGCAAGGATGTATGGAGAAATTGATATGGAAACTCAAATTCACCAACTTGAGAAGGAAGCATACAGTTCAGTTCTACGAGCCTTTAAGGCTCAAGCTGATGTCATTACTTGGGAGAAGGAAAGTTTGACTACAGAACTTAGAAAAGAGCTAAGATTATCAAATGAGGAACTCAGAGAACTTCTAGGTCATGTTAATGCAGATGATGTCATACAAAATATAAGGGAGTGGAGACAGGCAGGAGGCAATCAGCTTGGTGTGCTGAGTTTTGGGCAAGCTATTCATGATTCAATTCCAAGTCCCCCTATCTCTGCATCCCGTAAGAAGCAGAAGATAACTCCATCTGCACTATCACAATCTTTTGGTGGGCCTTCTCCATTTCATCCCCAATCCGTGGATGCACCTGTTCAGTCATCTTTGGTTGAAAAACGAGGACCTGTTTCTGGATCTAAGGGCAAGAAGCACAAACCTGGCCATGCATTACCTGGTGTATCTTCAATAAAGCAATATCCTTCATCTGGACTAGGTGGAAGGAATCAAGTACCTAATAGAGTTACCTCTGGCACTGTCATGGGTGAGCTTGCTGAGGGAGCATCGTTGGATTCATTAGTTGGTAGAAGAGTGCGAACAAGATGGCCTGATGACAACAACTTTTATGAAGCTGTTATCTCCGACTACAATCGATCCGAAGGTCTACATGCTTTGTTCTATGACTTGGGGACTGCAAATGAATCATGGGAGTGGGTTAATCTGTCAGAGCTTGGTTGAGGGAATATCGAAAACTGTCCTCCACCAGGAACCTACTGTCCCCAGTGGACCTTTATGGTCAGTCATACTTATTCCGATGACCCTTTCCTCTTTTCCTTCGCATTTTCTGGTAGCTGCTGCTGGAGCTACGGTGCCTTTCCGGCTGGTGACCCAGCCACCAGCATCGCTGTCCACTGATCTACACAATGGTGGTGGCGACGACCTCATCGGAGCTCAAAGGCTCTCTCACGCACCCATCTATTGTGTGCCAAACACCATTTTCGTGCTCCATTGTTCCAGCGCATCCGGCTGCCATTGCGGCCGCACTTCCATTGGTGCTATTGCCCCTCCATTTTGACACTGGCCCTTAAATTTTGGGTCATTCTGTGTTCCCCTTTGATTTCCTTTTTTGCAGTGAACCATGCGGCTGCTCTGCCCTTGTGTGACAAACTTCCCGTTGTCTTTCCGTCGGAGCTCACGTTCAACCACTGTCGCTCATCGCCAAAGATCGCCATGCCATTCATATGCACAGTCAACTCAAAACACCGCTGCATGTGACCCCATGCAGGGCCCTTTTTCAGCGTGTATAGTTCACGCACACAAAGCGTGACGCATCTCTGACAAGAGTCACACTGGTCTCCATTATCATTGTGGGCCTTTGTTGGCTGCTGTCAAGCCATCATTGATCCGGCACAACCACATGGCGAGAACCGTCTTTCGTTTCTCTAGGGTTACCTTATTTGGAACAAGCTCTCTCAACTTAGGAAGCTTTAGCTTGAGGGGTGTGTCGAGGATCAGGAATAAATATGTCATTTATTATATATTTTTTTTGGAAAGCTCATTTATTATAAATTGATTTGATATGATTTGATTTAGGGGAAATTTAATCTCCTCTAATTATGTGTAAATATTACTATCCGTCTGTATAAATGAGCATCCCGTTGTGTACTCTGACACACGGTTTTCACTCCACTTACCTATGTTTCTCTTATTTTTACAAATATGTTATAACTATAAAATTATGGTTGTAAAAATGTTTGGATTGAGAGACTTGAAGTGGAATTCAAGCAGTAAGAGAACAGAGAGTTCTCATGACACCCCCACCCCTAAAATGGTTGCTGTCAATGTTCCATTTCTTTGAAAAGAAGAGGTTTCTAGTTTTCTCTAAAAGTGATTCAGCATGTATGTGGC

Coding sequences of Glyma15g42450

Limit To All Plant Sequences

>Glyma15g42450.2   sequence type=CDS   gene model=Glyma15g42450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGTTTGGGCGGGAGCTCTCTTAAAAACAAGGAGTCACCACTTAGTGTCCAATTCGACAAATTTGAGGCTCTACTCGACAGAACCACCCATAGTTCGATTCTACCTTCGAATTCCTCTTCGGCTTCGACTCTGCGTTCCTCGTACACTGTCCATTTCGCCGGAATCTTGGTTTTTGCGTTTTTTTTTTCTCTCTCCTGAATCTGGGTGCTTTCAATTTTGGTGCAAACTGGCTATGGACCACGAACCCTACGATAGTAGCGGAACTGATGATGATTTTCCACCAACACATCAAAATAGAATCCCCAGAGGAGCACATCTTGCAGGAAATGGAAGTGCAGTAGGTTCAATTCCATATGCAAGGATGTATGGAGAAATTGATATGGAAACTCAAATTCACCAACTTGAGAAGGAAGCATACAGTTCAGTTCTACGAGCCTTTAAGGCTCAAGCTGATGTCATTACTTGGGAGAAGGAAAGTTTGACTACAGAACTTAGAAAAGAGCTAAGATTATCAAATGAGGAACTCAGAGAACTTCTAGGTCATGTTAATGCAGATGATGTCATACAAAATATAAGGGAGTGGAGACAGGCAGGAGGCAATCAGCTTGGTGTGCTGAGTTTTGGGCAAGCTATTCATGATTCAATTCCAAGTCCCCCTATCTCTGCATCCCGTAAGAAGCAGAAGATAACTCCATCTGCACTATCACAATCTTTTGGTGGGCCTTCTCCATTTCATCCCCAATCCGTGGATGCACCTGTTCAGTCATCTTTGGTTGAAAAACGAGGACCTGTTTCTGGATCTAAGGGCAAGAAGCACAAACCTGGCCATGCATTACCTGGTGTATCTTCAATAAAGCAATATCCTTCATCTGGACTAGGTGGAAGGAATCAAGTACCTAATAGAGTTACCTCTGGCACTGTCATGGGTGAGCTTGCTGAGGGAGCATCGTTGGATTCATTAGTTGGTAGAAGAGTGCGAACAAGATGGCCTGATGACAACAACTTTTATGAAGCTGTTATCTCCGACTACAATCGATCCGAAGGTCTACATGCTTTGTTCTATGACTTGGGGACTGCAAATGAATCATGGGAGTGGGTTAATCTGTCAGAGATGTCTCCTGCAGATATTCAGTGGGTTGGTGAGGATCCCGGAGTCAATCGTCGACAGGGTTTTGGTGGATCTGGTAATGGGATGAGAAGATCTGTAGGACGTGGAAGTGTTCCAGGAGTTGGAAAAGGTAGGGGAACTGCAAAGGGGCAATCCAGAAAAGATTTCTTACCATCACAGAATGGAATAGGAATGAAGACTCCAGATGATATACAAATACTTCACACAGACACGTTAGTAAAGGAGGTGGAGAGGGTATTCAATGCAAAACATCCCGATGCACTTGAAATCGAGCAAGTCAAGAAAGTATTGAAGGATCATGAGCAAGCTCTTATTGATGCAATTGCAAGGCTTGCAGATCTTTCTGACGGCGAAAGTGATGAGGGTGGTTTCCATTTCTCACATGCTACAGCAATGGCTCACTAA

>Glyma15g42450.3   sequence type=CDS   gene model=Glyma15g42450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGTTTGGGCGGGAGCTCTCTTAAAAACAAGGAGTCACCACTTAGTGTCCAATTCGACAAATTTGAGGCTCTACTCGACAGAACCACCCATAGTTCGATTCTACCTTCGAATTCCTCTTCGGCTTCGACTCTGCGTTCCTCGTACACTGTCCATTTCGCCGGAATCTTGGTTTTTGCGTTTTTTTTTTCTCTCTCCTGAATCTGGGTGCTTTCAATTTTGGTGCAAACTGGCTATGGACCACGAACCCTACGATAGTAGCGGAACTGATGATGATTTTCCACCAACACATCAAAATAGAATCCCCAGAGGAGCACATCTTGCAGGAAATGGAAGTGCAGTAGGTTCAATTCCATATGCAAGGATGTATGGAGAAATTGATATGGAAACTCAAATTCACCAACTTGAGAAGGAAGCATACAGTTCAGTTCTACGAGCCTTTAAGGCTCAAGCTGATGTCATTACTTGGGAGAAGGAAAGTTTGACTACAGAACTTAGAAAAGAGCTAAGATTATCAAATGAGGAACTCAGAGAACTTCTAGGTCATGTTAATGCAGATGATGTCATACAAAATATAAGGGAGTGGAGACAGGCAGGAGGCAATCAGCTTGGTGTGCTGAGTTTTGGGCAAGCTATTCATGATTCAATTCCAAGTCCCCCTATCTCTGCATCCCGTAAGAAGCAGAAGATAACTCCATCTGCACTATCACAATCTTTTGGTGGGCCTTCTCCATTTCATCCCCAATCCGTGGATGCACCTGTTCAGTCATCTTTGGTTGAAAAACGAGGACCTGTTTCTGGATCTAAGGGCAAGAAGCACAAACCTGGCCATGCATTACCTGGTGTATCTTCAATAAAGCAATATCCTTCATCTGGACTAGGTGGAAGGAATCAAGTACCTAATAGAGTTACCTCTGGCACTGTCATGGGTGAGCTTGCTGAGGGAGCATCGTTGGATTCATTAGTTGGTAGAAGAGTGCGAACAAGATGGCCTGATGACAACAACTTTTATGAAGCTGTTATCTCCGACTACAATCGATCCGAAGGTCTACATGCTTTGTTCTATGACTTGGGGACTGCAAATGAATCATGGGAGTGGGTTAATCTGTCAGAGCTTGGTTGA

Predicted protein sequences of Glyma15g42450

Limit To All Plant Sequences

>Glyma15g42450.2   sequence type=predicted peptide   gene model=Glyma15g42450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVWAGALLKTRSHHLVSNSTNLRLYSTEPPIVRFYLRIPLRLRLCVPRTLSISPESWFLRFFFLSPESGCFQFWCKLAMDHEPYDSSGTDDDFPPTHQNRIPRGAHLAGNGSAVGSIPYARMYGEIDMETQIHQLEKEAYSSVLRAFKAQADVITWEKESLTTELRKELRLSNEELRELLGHVNADDVIQNIREWRQAGGNQLGVLSFGQAIHDSIPSPPISASRKKQKITPSALSQSFGGPSPFHPQSVDAPVQSSLVEKRGPVSGSKGKKHKPGHALPGVSSIKQYPSSGLGGRNQVPNRVTSGTVMGELAEGASLDSLVGRRVRTRWPDDNNFYEAVISDYNRSEGLHALFYDLGTANESWEWVNLSEMSPADIQWVGEDPGVNRRQGFGGSGNGMRRSVGRGSVPGVGKGRGTAKGQSRKDFLPSQNGIGMKTPDDIQILHTDTLVKEVERVFNAKHPDALEIEQVKKVLKDHEQALIDAIARLADLSDGESDEGGFHFSHATAMAH*

>Glyma15g42450.3   sequence type=predicted peptide   gene model=Glyma15g42450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVWAGALLKTRSHHLVSNSTNLRLYSTEPPIVRFYLRIPLRLRLCVPRTLSISPESWFLRFFFLSPESGCFQFWCKLAMDHEPYDSSGTDDDFPPTHQNRIPRGAHLAGNGSAVGSIPYARMYGEIDMETQIHQLEKEAYSSVLRAFKAQADVITWEKESLTTELRKELRLSNEELRELLGHVNADDVIQNIREWRQAGGNQLGVLSFGQAIHDSIPSPPISASRKKQKITPSALSQSFGGPSPFHPQSVDAPVQSSLVEKRGPVSGSKGKKHKPGHALPGVSSIKQYPSSGLGGRNQVPNRVTSGTVMGELAEGASLDSLVGRRVRTRWPDDNNFYEAVISDYNRSEGLHALFYDLGTANESWEWVNLSELG*

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