Glyma15g42440 - SoyBase

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Report for Sequence Feature Glyma15g42440

Feature Type:	gene_model
Chromosome:	Gm15
Start:	49859299
stop:	49864506
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g42440

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G44430	AT	Annotation by Michelle Graham. TAIR10: DNA-binding bromodomain-containing protein \| chr2:18333603-18336165 FORWARD LENGTH=646	SoyBase	E_val: 4.00E-93	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
PF00249	PFAM	Myb-like DNA-binding domain	JGI		ISS
PF00439	PFAM	Bromodomain	JGI		ISS
UniRef100_G7IJ06	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Bromodomain protein n=1 Tax=Medicago truncatula RepID=G7IJ06_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233AB84	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233AB84 related cluster n=1 Tax=unknown RepID=UPI000233AB84	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g42440

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g42440

Paralog	Evidence	Comments
Glyma08g15870	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g42440 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g269600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g42440

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g42440

Limit To All Plant Sequences

>Glyma15g42440.2   sequence type=CDS   gene model=Glyma15g42440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAAACCACCAAAATCACAAGGTAGAATCAGAACCGGACATAGAGAAGAACCACCATCACCGCCACCAACAGCAGCAGCAGCAACAACACCGTAACGAAGTGTGGGGCACGTGGGAGGAGCTGTTGCTAGCGTGCGCCGTGAACCGCCATGGCTTCAAGGACTGGGACGCCGTCGCCATGGAGGTCCAGTCGCGCACCACGCGCCTCCTCGCCACCGCGCACCACTGCGAGCAGAAATTTGACGATCTCAGCCGCCGATTCGCCGACCAATGCAACGACGACGTTCCGCCGTCGCGCCAGAACGGCGGCGCCGCTGCTATCTCCGATCACGTCCCCTGGCTCGACGAATTGCGAAAACTCCGCGTCGCCGAGCTCCGCCGCGAGGTCCAACGCAGCGACGTTTCCATCCTGTCGTTGCAGTTGGAGGTGAAGAGGTTAGAGGAGGAGAAAACGAAGGAGAAAGACGGAAAGGACGACAAGAAACCAGATCTGGCGGTTTCCGGCGAGTTGCGGCCGGAAAACGACAAAACCGGCGGGGAAGTTGACGAGGCTGGACCGGCGAATTCTGAACCGGAGGAGAGAACCGCGAACAACACAGACAAGACGTTGCCAACCATGGGCGACGAATCGGACCGGGAGAACCAATCGGTTAACGAATCCAACTCGACCGGTTCGCGGTTCGAGAAAACCGGAGACGGCGACGCGAAGGCAGGAACCGGACCGGCTCCGGTTCAAACCGGTTCGATTGAACCGGATCCGGTCTTGCGGAAGGGAAAGCCGGTTGGAGAGGAATCGAATAACGGAAGCTACGATGCGTTGGCGAAGGTGCCAACGTGCGAGTCGGTGCCTCCGAGTGAAGAGAGAAAAGTGGAGGAGGATGATAACTCGTCCGAGTTACATGACTCGGTGGCTCACTCGGGCGAGGGAGGGACGAGGGAGAGCAGCGAGGTGCAGAGCTCCGCGAGCTTGACGAGGAAGAGGAAGACACGGCGGAGGAAGGAGGTTTCCGGCGGCGGTGGCGCCTCATCTCCGGCGGAGAACGACGAGTTGGCAACGGTGAAATCAGAACCGTTGGTTGGGGTTTTGGAGTTGATCAAGGGGCACGAGCACAGCTCGTTGTTCGAGCGCCGTCTTGAAAGCCAGCAGGATACCGATAGATACAAAGACCTAGTGAAACAGCCCATGGACTTAGAAACCATACAATTGAGACTCCAAAAGGGTCACTATTCCTCATGCACCAGTGCATTCTTCCGCGACCTCCTCCTCCTCTTCACCAACGCCACCGTGTTCTTCTCCCATGACACCCTGGAATCACAGGTAGGGCGGCAGCTGCACCGCCTTGCCACCACGGAGATGAAGAACCACGGCCAAGCACAATCCGATCCTATCCCCCGGAAGAACGATTCACTCCCACCAAATGCATCATTAGCTAAACCAGATTCTCTCATTTCCAAGAACAAAGCCTCTGGTCCTATATTGGTATGCCGCAAACGCAGTTCAATGTTAGCCAAACCTTCCTCGGCCACCTTTGGCCAAAAGGGTGACCAACCCACCTTCAATGACAAGAAGGAAAGGCCATCATCTGATGCAAAGCCACCCATGAAACCCTCTTCTTCTGATACAGACGAAGAGGAGCTTCCCAAGGCTAAGGAAAAGCCTGTCACTGGAGCAAGAAGCTTGAGGAGGAGCTACAAGAACCTCAATAATAATAATAACAAGAAACCATCCTCTAACTCCACTCCTAAGACAGGGTCCTCGGGGAACAAGCCGTCGGAGACCGTCAAACCGGAGAAGAGCAAAGCAGAGGGAGGGCCAGACAAGAAGAGGAATGCAGCTGCAGATTTCTTGAAAAGGATTAAGCGCAACACTTCGGCGGAAGCATCAAAGGGTGGTAGCGGTGGCAGTGGTGGTGGTGGAAGCGGCGGCGGTGGAGGAAGTAGTAGCAGCAGCAAGGGTGGTGGAGGTGGTAATGGTGTCAAAGAGCAGAAGAAAATGGTGAACAATGGAAAAGGGGATAAAGGGAAAGAAAGGGCATCAAGGCATAATAACGTTGGAGGAGGTTCAGGGTCTGGAGATAAAAGGAATAGTAAGAATGTTGAGAACAACTCACAGTCAAAGAGAAGTGTTGGTAGACCTCCAAAGAAAGCAGCAGAGACAAATGCAGGTTCTGCAAAGCGTGGGAGAGAAAGTAGTGCTAGTGCTGGCAAGGATAAGCGACCCAAAAAACGTTCCAAGAAATGA

Predicted protein sequences of Glyma15g42440

Limit To All Plant Sequences

>Glyma15g42440.2   sequence type=predicted peptide   gene model=Glyma15g42440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MENHQNHKVESEPDIEKNHHHRHQQQQQQQHRNEVWGTWEELLLACAVNRHGFKDWDAVAMEVQSRTTRLLATAHHCEQKFDDLSRRFADQCNDDVPPSRQNGGAAAISDHVPWLDELRKLRVAELRREVQRSDVSILSLQLEVKRLEEEKTKEKDGKDDKKPDLAVSGELRPENDKTGGEVDEAGPANSEPEERTANNTDKTLPTMGDESDRENQSVNESNSTGSRFEKTGDGDAKAGTGPAPVQTGSIEPDPVLRKGKPVGEESNNGSYDALAKVPTCESVPPSEERKVEEDDNSSELHDSVAHSGEGGTRESSEVQSSASLTRKRKTRRRKEVSGGGGASSPAENDELATVKSEPLVGVLELIKGHEHSSLFERRLESQQDTDRYKDLVKQPMDLETIQLRLQKGHYSSCTSAFFRDLLLLFTNATVFFSHDTLESQVGRQLHRLATTEMKNHGQAQSDPIPRKNDSLPPNASLAKPDSLISKNKASGPILVCRKRSSMLAKPSSATFGQKGDQPTFNDKKERPSSDAKPPMKPSSSDTDEEELPKAKEKPVTGARSLRRSYKNLNNNNNKKPSSNSTPKTGSSGNKPSETVKPEKSKAEGGPDKKRNAAADFLKRIKRNTSAEASKGGSGGSGGGGSGGGGGSSSSSKGGGGGNGVKEQKKMVNNGKGDKGKERASRHNNVGGGSGSGDKRNSKNVENNSQSKRSVGRPPKKAAETNAGSAKRGRESSASAGKDKRPKKRSKK*

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