Glyma15g42430 - SoyBase

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Report for Sequence Feature Glyma15g42430

Feature Type:	gene_model
Chromosome:	Gm15
Start:	49847177
stop:	49850423
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g42430

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G59600	AT	Annotation by Michelle Graham. TAIR10: RNA polymerase Rpb8 \| chr3:22016629-22017923 FORWARD LENGTH=146	SoyBase	E_val: 1.00E-41	ISS
GO:0006351	GO-bp	Annotation by Michelle Graham. GO Biological Process: transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005665	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: DNA-directed RNA polymerase II, core complex	SoyBase	N/A	ISS
GO:0003899	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA-directed RNA polymerase activity	SoyBase	N/A	ISS
KOG3400	KOG	RNA polymerase subunit 8	JGI		ISS
PTHR10917	Panther	DNA-DIRECTED RNA POLYMERASE SUBUNIT RPB8	JGI		ISS
PF03870	PFAM	RNA polymerase Rpb8	JGI		ISS
UniRef100_G7JKJ0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Medicago truncatula RepID=G7JKJ0_MEDTR	SoyBase	E_val: 5.00E-68	ISS
UniRef100_I1MJJ9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MJJ9_SOYBN	SoyBase	E_val: 2.00E-101	ISS

Expression Patterns of Glyma15g42430

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g42430

Paralog	Evidence	Comments
Glyma08g15860	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g42430 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g269500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g42430

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g42430

Limit To All Plant Sequences

>Glyma15g42430.1   sequence type=CDS   gene model=Glyma15g42430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTGAACTTCTTTTTAATGACATTTTCAAGGTCGAGAAGGTAGACCCTGATGGTAAAAAGTATGACAAGGTTTCTCGGATTGTGGCACGGAGTGAGAAGTGTGACATGTACATGCTTCTAGATATAAATACCGAGATTTATCCGATGGGGGAAAAAGAAAGATTCTTGATGGCTTTGTCTCCTTCACTTGTTCTGAATACTAAGGATGGCTCGGTGTCAATTCAAGACAAGTTTGAATACATCATGCATGGGAGGTTATATAACATTACGAAACCCCAGCTTGAAGAGAAGGAATGCTCGAAACCTCAGCTTGAAGTGGAGGTATATGCATCGTTTGGTGGGCTTCAGTTGATGCTGAAAGGGCATGCTTCCCATTGTGTTAAGTTTGCAGTCGATCAGAAGTTGTTTTTACTAATCAGGAAGGTTGAAAGTTGA

Predicted protein sequences of Glyma15g42430

Limit To All Plant Sequences

>Glyma15g42430.1   sequence type=predicted peptide   gene model=Glyma15g42430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSELLFNDIFKVEKVDPDGKKYDKVSRIVARSEKCDMYMLLDINTEIYPMGEKERFLMALSPSLVLNTKDGSVSIQDKFEYIMHGRLYNITKPQLEEKECSKPQLEVEVYASFGGLQLMLKGHASHCVKFAVDQKLFLLIRKVES*

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