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Report for Sequence Feature Glyma15g42310

Feature Type:gene_model
Chromosome:Gm15
Start:49703665
stop:49704757
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g42310
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G03510AT Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:876258-877547 REVERSE LENGTH=429 SoyBaseE_val: 2.00E-81ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
PTHR24015Panther FAMILY NOT NAMED JGI ISS
PTHR24015:SF158Panther PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN JGI ISS
PF01535PFAM PPR repeat JGI ISS
UniRef100_E5GBQ5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide (PPR) repeat-containing protein n=1 Tax=Cucumis melo subsp. melo RepID=E5GBQ5_CUCME SoyBaseE_val: 4.00E-78ISS
UniRef100_I1MJJ1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MJJ1_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma15g42310
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g42310 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g42310 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g268600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma15g42310
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma15g42310
>Glyma15g42310.1   sequence type=CDS   gene model=Glyma15g42310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTCTTTCCCACTTTTTTTGAATTGCATAAATTAGAATTAGCCCTCCAACTCTTCCACCCACTTGACACTAACCCTACTAATTCCACCTTCAACCCCATCATCTCCGCCCTTGCCACCACCAATCCCTTTGATTCCATTTCCTTCTATCGCAAAATGTTACCCCTTAACCTAAAATTGTGCTTAATTACACTTTTGTCCTTGCTCCTTGCTTGTGTTAACCTTGTCGCTTTTAATTTAATCAAAGAGATCCATGGTTGCGCCGTGAGGAACTCCATCCACCTGCATCACCAGTTGAGCAGTGCTTTGATTGAAGTGTTTGAGAGATGTGGTTCTCTTCGTTGTGCAAGTTTGGTGTTTGAGAAAATGAGGGATGAGGATAAAGATGTGGTTATGTGGAGCAATTTGATCCCTACGTGCACCTTCCACGGTGAGGCGGAGGTGGGGCTAGAGAGTTTTCGATGGATGGAGACTGTCGAAGCTTGCAATCATGTTGGGTTGGTGGATGAGGCGGTGTGGTATTTTGCAAGGATGAGTGGGGAGTATGGTGTGGAGGCTGGGAGTGATCATTATTCGTGCTTGGTGAATGTTTTGGGGAGGGCTGGGAGGTTGCAGGAGGCTTATGAGGTGATCAAGGGGATGTCGGTGAAGGTGACGGAAAAGGCGTGGGAGGGGCTGCTTGGGGCGTGCAAGAATTTCGAGGAGCTGAGGCTGGCAAAGGTTGCATCAAGGGCATTGGTGGAGGTGGAGTCAGGGAATGCAGCTAATTATGGAGGATGGAGGAGGCGGAGAGGGTGGAGGAAGATGAAGGAGAGGGGAGTGAGGGCAGCCGCAGGGAGTAGTTGGGTTGTGTATTCGGAGACGTGA
Predicted protein sequences of Glyma15g42310
>Glyma15g42310.1   sequence type=predicted peptide   gene model=Glyma15g42310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVFPTFFELHKLELALQLFHPLDTNPTNSTFNPIISALATTNPFDSISFYRKMLPLNLKLCLITLLSLLLACVNLVAFNLIKEIHGCAVRNSIHLHHQLSSALIEVFERCGSLRCASLVFEKMRDEDKDVVMWSNLIPTCTFHGEAEVGLESFRWMETVEACNHVGLVDEAVWYFARMSGEYGVEAGSDHYSCLVNVLGRAGRLQEAYEVIKGMSVKVTEKAWEGLLGACKNFEELRLAKVASRALVEVESGNAANYGGWRRRRGWRKMKERGVRAAAGSSWVVYSET*






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