Glyma15g42280 - SoyBase

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Report for Sequence Feature Glyma15g42280

Feature Type:	gene_model
Chromosome:	Gm15
Start:	49684003
stop:	49685677
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g42280

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G42140	AT	Annotation by Michelle Graham. TAIR10: VQ motif-containing protein \| chr2:17568964-17569482 REVERSE LENGTH=172	SoyBase	E_val: 3.00E-20	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF05678	PFAM	VQ motif	JGI		ISS
UniRef100_D7LVY8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: VQ motif-containing protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LVY8_ARALL	SoyBase	E_val: 3.00E-17	ISS
UniRef100_I1MJI7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MJI7_SOYBN	SoyBase	E_val: 4.00E-100	ISS

Proteins Associated with Glyma15g42280

Locus	Gene Symbol	Protein Name
	VQ65	VQ motif containing protein gene 65

Expression Patterns of Glyma15g42280

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g42280 not represented in the dataset	Glyma15g42280 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g42280

Paralog	Evidence	Comments
Glyma08g16790	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g42280 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g268300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g42280

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g42280

Limit To All Plant Sequences

>Glyma15g42280.2   sequence type=transcript   gene model=Glyma15g42280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGGACGCATAATGTCTTTCTTGCTTTATTAATTTATTGACTATAAATTTGGATATAATAGCAGGTAACCATCAGTTTCAATCCACTCTTCTTTCAACACTCGGAATCAACCAAAGAAGAGATGACAAAGCTACACACTTGTTATCCAAGCTCTGCATCTTCAAAGCTAGGAATTGACAAAGATTCACATGTGATCTCAAAAACCAAGCCAAAGATCAGGATAATTCATGTGTATGCTCCAGAAATCATTAAAACTGATGCTGCAAATTTCAAAGAGTTGGTTCAAAGGCTCACAGGAAAGCCAAAAGAAGAAGAAGGGAGAGGTAAAAGCAAGTCCAAAACTGCACTAACCAAAGACCCAAAGGATTCACACCCCAAGAAGGTCATGGTCATGCAAGATGATGAGTTTCTGAGTCTGCAAAATAGGACAAGGGTAAAGAATGAATATAAAGAGGAGGAAATTCAAGATGATATGTGGAGGTCAAAGTCAAACGAAAAGTTCAGTGGTTTCCTTGATGGGTTCTTAGAATTGGATGGTTTTATGGAAGATGCATGTGTATTGATCTCAATTAGTCCTTTGGATGCTTCAGGATTATAGGAGAAGAAGGGCTTTTTGTACTTTTGCAGGCTAAAAATTCACAGATCAATTCATTCCATTTGGGAACAAAATTATAATTCGAGCTTTGACAACATTGGAGTAATCAAATAGTGTCCTTGTCGTGCATACAATATTAATGTAGACCTGACACAGTTGTTTATCTTTATGAAGACTTTTCAAGAGTAAAGAGCTTCAGAAATAAACAGCATTACACTTTGAAAGTGAAAGAAAGATTATTTAGATAGTAAATTGAATTGTGATTGGAGATGAAATTGGAATTGTTGAACAAAATAGATGGAAAAAAACTTATGCTGTTTGTTAGAGAATACAAGATGTAATGCAAGTTGTGAAGCCACCATTTGGAACTCATCATTCAAGACTTTTCAATAGTAGTGAGCTTTGGAAATCATCAGCATTACGCTTTGAAAGCGAAAGGAATATTATTATAGACAGTAAATTCAGTTGTCAAATAGAGCATGCTTATTAGGGATGAAAAGGGATATGGATTAATGAACGCTGAGAAGCCACTATTTAGAACTCATCATTAGAGACTTCATCACAAATATTGAGATGAGGTTCAATAATCCAAACCAACATAATAGATTCATCATAAATGTATGATCTTCAACATTCGACA

>Glyma15g42280.3   sequence type=transcript   gene model=Glyma15g42280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGGACGCATAATGTCTTTCTTGCTTTATTAATTTATTGACTATAAATTTGGATATAATAGCAGGTAACCATCAGTTTCAATCCACTCTTCTTTCAACACTCGGAATCAACCAAAGAAGAGATGACAAAGCTACACACTTGTTATCCAAGCTCTGCATCTTCAAAGCTAGGAATTGACAAAGATTCACATGTGATCTCAAAAACCAAGCCAAAGATCAGGATAATTCATGTGTATGCTCCAGAAATCATTAAAACTGATGCTGCAAATTTCAAAGAGTTGGTTCAAAGGCTCACAGGAAAGCCAAAAGAAGAAGAAGGGAGAGGTAAAAGCAAGTCCAAAACTGCACTAACCAAAGACCCAAAGGATTCACACCCCAAGAAGGTCATGGTCATGCAAGATGATGAGTTTCTGAGTCTGCAAAATAGGACAAGGGTAAAGAATGAATATAAAGAGGAGGAAATTCAAGATGATATGTGGAGGTCAAAGTCAAACGAAAAGTTCAGTGGTTTCCTTGATGGGTTCTTAGAATTGGATGGTTTTATGGAAGATGCATGTGTATTGATCTCAATTAGTCCTTTGGATGCTTCAGGATTATAGTGAGTATTCATTAACATTACTCACCATAATACTTTGTTTTGTGTATGATAGTTGTCTTGAATTGCATCTCTTTCTCTTGGTAATGATTGCTTTCTAGGTCTTTCACATAGCAATTGTTAACCAATTTTGCCTAGTTAAGCTTCTTTTGTTTTCTCTCTCAGCTATTGTTTTTTCCTTCTTCTAATCATTTCCAAGGGAGAAGAAGGGCTTTTTGTACTTTTGCAGGCTAAAAATTCACAGATCAATTCATTCCATTTGGGAACAAAATTATAATTCGAGCTTTGACAACATTGGAGTAATCAAATAGTGTCCTTGTCGTGCATACAATATTAATGTAGACCTGACACAGTTGTTTATCTTTATGAAGACTTTTCAAGAGTAAAGAGCTTCAGAAATAAACAGCATTACACTTTGAAAGTGAAAGAAAGATTATTTAGATAGTAAATTGAATTGTGATTGGAGATGAAATTGGAATTGTTGAACAAAATAGATGGAAAAAAACTTATGCTGTTTGTTAGAGAATACAAGATGTAATGCAAGTTGTGAAGCCACCATTTGGAACTCATCATTCAAGACTTTTCAATAGTAGTGAGCTTTGGAAATCATCAGCATTACGCTTTGAAAGCGAAAGGAATATTATTATAGACAGTAAATTCAGTTGTCAAATAGAGCATGCTTATTAGGGATGAAAAGGGATATGGATTAATGAACGCTGAGAAGCCACTATTTAGAACTCATCATTAGAGACTTCATCACAAATATTGAGATGAGGTTCAATAATCCAAACCAACATAATAGATTCATCATAAATGTATGATCTTCAACATTCGACA

>Glyma15g42280.4   sequence type=transcript   gene model=Glyma15g42280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATCCAATCTTAGTTTCCAAAAGACTGCTTCAAGTAAACTTGAGAATCAGCACCTTGTTTTCTTGCAGGATATAATAGCAGGTAACCATCAGTTTCAATCCACTCTTCTTTCAACACTCGGAATCAACCAAAGAAGAGATGACAAAGCTACACACTTGTTATCCAAGCTCTGCATCTTCAAAGCTAGGAATTGACAAAGATTCACATGTGATCTCAAAAACCAAGCCAAAGATCAGGATAATTCATGTGTATGCTCCAGAAATCATTAAAACTGATGCTGCAAATTTCAAAGAGTTGGTTCAAAGGCTCACAGGAAAGCCAAAAGAAGAAGAAGGGAGAGGTAAAAGCAAGTCCAAAACTGCACTAACCAAAGACCCAAAGGATTCACACCCCAAGAAGGTCATGGTCATGCAAGATGATGAGTTTCTGAGTCTGCAAAATAGGACAAGGGTAAAGAATGAATATAAAGAGGAGGAAATTCAAGATGATATGTGGAGGTCAAAGTCAAACGAAAAGTTCAGTGGTTTCCTTGATGGGTTCTTAGAATTGGATGGTTTTATGGAAGATGCATGTGTATTGATCTCAATTAGTCCTTTGGATGCTTCAGGATTATAGGAGAAGAAGGGCTTTTTGTACTTTTGCAGGCTAAAAATTCACAGATCAATTCATTCCATTTGGGAACAAAATTATAATTCGAGCTTTGACAACATTGGAGTAATCAAATAGTGTCCTTGTCGTGCATACAATATTAATGTAGACCTGACACAGTTGTTTATCTTTATGAAGACTTTTCAAGAGTAAAGAGCTTCAGAAATAAACAGCATTACACTTTGAAAGTGAAAGAAAGATTATTTAGATAGTAAATTGAATTGTGATTGGAGATGAAATTGGAATTGTTGAACAAAATAGATGGAAAAAAACTTATGCTGTTTGTTAGAGAATACAAGATGTAATGCAAGTTGTGAAGCCACCATTTGGAACTCATCATTCAAGACTTTTCAATAGTAGTGAGCTTTGGAAATCATCAGCATTACGCTTTGAAAGCGAAAGGAATATTATTATAGACAGTAAATTCAGTTGTCAAATAGAGCATGCTTATTAGGGATGAAAAGGGATATGGATTAATGAACGCTGAGAAGCCACTATTTAGAACTCATCATTAGAGACTTCATCACAAATATTGAGATGAGGTTCAATAATCCAAACCAACATAATAGATTCATCATAAATGTATGATCTTCAACATTCGACA

Coding sequences of Glyma15g42280

Limit To All Plant Sequences

>Glyma15g42280.1   sequence type=CDS   gene model=Glyma15g42280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACAAAGCTACACACTTGTTATCCAAGCTCTGCATCTTCAAAGCTAGGAATTGACAAAGATTCACATGTGATCTCAAAAACCAAGCCAAAGATCAGGATAATTCATGTGTATGCTCCAGAAATCATTAAAACTGATGCTGCAAATTTCAAAGAGTTGGTTCAAAGGCTCACAGGAAAGCCAAAAGAAGAAGAAGGGAGAGGTAAAAGCAAGTCCAAAACTGCACTAACCAAAGACCCAAAGGATTCACACCCCAAGAAGGTCATGGTCATGCAAGATGATGAGTTTCTGAGTCTGCAAAATAGGACAAGGGTAAAGAATGAATATAAAGAGGAGGAAATTCAAGATGATATGTGGAGGTCAAAGTCAAACGAAAAGTTCAGTGGTTTCCTTGATGGGTTCTTAGAATTGGATGGTTTTATGGAAGAGTTAAGTACTGTGCCTTCAGAGAATCAAAATTAA

>Glyma15g42280.2   sequence type=CDS   gene model=Glyma15g42280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACAAAGCTACACACTTGTTATCCAAGCTCTGCATCTTCAAAGCTAGGAATTGACAAAGATTCACATGTGATCTCAAAAACCAAGCCAAAGATCAGGATAATTCATGTGTATGCTCCAGAAATCATTAAAACTGATGCTGCAAATTTCAAAGAGTTGGTTCAAAGGCTCACAGGAAAGCCAAAAGAAGAAGAAGGGAGAGGTAAAAGCAAGTCCAAAACTGCACTAACCAAAGACCCAAAGGATTCACACCCCAAGAAGGTCATGGTCATGCAAGATGATGAGTTTCTGAGTCTGCAAAATAGGACAAGGGTAAAGAATGAATATAAAGAGGAGGAAATTCAAGATGATATGTGGAGGTCAAAGTCAAACGAAAAGTTCAGTGGTTTCCTTGATGGGTTCTTAGAATTGGATGGTTTTATGGAAGATGCATGTGTATTGATCTCAATTAGTCCTTTGGATGCTTCAGGATTATAG

>Glyma15g42280.3   sequence type=CDS   gene model=Glyma15g42280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACAAAGCTACACACTTGTTATCCAAGCTCTGCATCTTCAAAGCTAGGAATTGACAAAGATTCACATGTGATCTCAAAAACCAAGCCAAAGATCAGGATAATTCATGTGTATGCTCCAGAAATCATTAAAACTGATGCTGCAAATTTCAAAGAGTTGGTTCAAAGGCTCACAGGAAAGCCAAAAGAAGAAGAAGGGAGAGGTAAAAGCAAGTCCAAAACTGCACTAACCAAAGACCCAAAGGATTCACACCCCAAGAAGGTCATGGTCATGCAAGATGATGAGTTTCTGAGTCTGCAAAATAGGACAAGGGTAAAGAATGAATATAAAGAGGAGGAAATTCAAGATGATATGTGGAGGTCAAAGTCAAACGAAAAGTTCAGTGGTTTCCTTGATGGGTTCTTAGAATTGGATGGTTTTATGGAAGATGCATGTGTATTGATCTCAATTAGTCCTTTGGATGCTTCAGGATTATAG

>Glyma15g42280.4   sequence type=CDS   gene model=Glyma15g42280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACAAAGCTACACACTTGTTATCCAAGCTCTGCATCTTCAAAGCTAGGAATTGACAAAGATTCACATGTGATCTCAAAAACCAAGCCAAAGATCAGGATAATTCATGTGTATGCTCCAGAAATCATTAAAACTGATGCTGCAAATTTCAAAGAGTTGGTTCAAAGGCTCACAGGAAAGCCAAAAGAAGAAGAAGGGAGAGGTAAAAGCAAGTCCAAAACTGCACTAACCAAAGACCCAAAGGATTCACACCCCAAGAAGGTCATGGTCATGCAAGATGATGAGTTTCTGAGTCTGCAAAATAGGACAAGGGTAAAGAATGAATATAAAGAGGAGGAAATTCAAGATGATATGTGGAGGTCAAAGTCAAACGAAAAGTTCAGTGGTTTCCTTGATGGGTTCTTAGAATTGGATGGTTTTATGGAAGATGCATGTGTATTGATCTCAATTAGTCCTTTGGATGCTTCAGGATTATAG

Predicted protein sequences of Glyma15g42280

Limit To All Plant Sequences

>Glyma15g42280.1   sequence type=predicted peptide   gene model=Glyma15g42280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTKLHTCYPSSASSKLGIDKDSHVISKTKPKIRIIHVYAPEIIKTDAANFKELVQRLTGKPKEEEGRGKSKSKTALTKDPKDSHPKKVMVMQDDEFLSLQNRTRVKNEYKEEEIQDDMWRSKSNEKFSGFLDGFLELDGFMEELSTVPSENQN*

>Glyma15g42280.2   sequence type=predicted peptide   gene model=Glyma15g42280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTKLHTCYPSSASSKLGIDKDSHVISKTKPKIRIIHVYAPEIIKTDAANFKELVQRLTGKPKEEEGRGKSKSKTALTKDPKDSHPKKVMVMQDDEFLSLQNRTRVKNEYKEEEIQDDMWRSKSNEKFSGFLDGFLELDGFMEDACVLISISPLDASGL*

>Glyma15g42280.3   sequence type=predicted peptide   gene model=Glyma15g42280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTKLHTCYPSSASSKLGIDKDSHVISKTKPKIRIIHVYAPEIIKTDAANFKELVQRLTGKPKEEEGRGKSKSKTALTKDPKDSHPKKVMVMQDDEFLSLQNRTRVKNEYKEEEIQDDMWRSKSNEKFSGFLDGFLELDGFMEDACVLISISPLDASGL*

>Glyma15g42280.4   sequence type=predicted peptide   gene model=Glyma15g42280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTKLHTCYPSSASSKLGIDKDSHVISKTKPKIRIIHVYAPEIIKTDAANFKELVQRLTGKPKEEEGRGKSKSKTALTKDPKDSHPKKVMVMQDDEFLSLQNRTRVKNEYKEEEIQDDMWRSKSNEKFSGFLDGFLELDGFMEDACVLISISPLDASGL*

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