Report for Sequence Feature Glyma15g42220
Feature Type: gene_model
Chromosome: Gm15
Start: 49620948
stop: 49622060
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma15g42220
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G31940 AT
Annotation by Michelle Graham. TAIR10: unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19875.1); Has 227 Blast hits to 227 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 227; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:13580600-13580962 FORWARD LENGTH=120
SoyBase E_val: 1.00E-38 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
UniRef100_C6T400 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T400_SOYBN
SoyBase E_val: 2.00E-82 ISS
UniRef100_D7LEB2 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Oxidoreductase/ transition metal ion binding protein n=2 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LEB2_ARALL
SoyBase E_val: 4.00E-38 ISS
Expression Patterns of Glyma15g42220
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma15g42220
Paralog Evidence Comments
Glyma08g16850 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma15g42220 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.15g267900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma15g42220
Coding sequences of Glyma15g42220
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma15g42220.1 sequence type=CDS gene model=Glyma15g42220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCCTACAACTCTTCCCGAAATTCTCAACCTGCTCTCCCTATGCACCTGTGTTTCTTCTTGCTCACTTTGTTCATGTTCCTTAGTTTCTCATTGTACTCAAGCTACGAGCCAATAATGGAGAGCTTCATGGACCAAGTGAAGTTGGTTCTAATGGTTTCTCCACTGCTGCTTCTGCTTGTTGTGCACTTCCTTTGCAACTATGGAAGTGCTGGAGGGGTCATGTCTACACTGATTCCTTTGCCAGAGAGAGAGTCACTGCACAGAGCAGGTGGAACTCCTTGGGGTGTTGGGTTGGTTCTTGTTCTTCTTCTCTTCATGGTCTCTTACCAGTCTTCTTTCCAAGAACGTTGGTTTCCTATCCTCACAAGGTGA
Predicted protein sequences of Glyma15g42220
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma15g42220.1 sequence type=predicted peptide gene model=Glyma15g42220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAYNSSRNSQPALPMHLCFFLLTLFMFLSFSLYSSYEPIMESFMDQVKLVLMVSPLLLLLVVHFLCNYGSAGGVMSTLIPLPERESLHRAGGTPWGVGLVLVLLLFMVSYQSSFQERWFPILTR*