Glyma15g42150 - SoyBase

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Report for Sequence Feature Glyma15g42150

Feature Type:	gene_model
Chromosome:	Gm15
Start:	49546330
stop:	49549132
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g42150

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G04770	AT	Annotation by Michelle Graham. TAIR10: 40s ribosomal protein SA B \| chr3:1309544-1310846 REVERSE LENGTH=280	SoyBase	E_val: 2.00E-147	ISS
GO:0000028	GO-bp	Annotation by Michelle Graham. GO Biological Process: ribosomal small subunit assembly	SoyBase	N/A	ISS
GO:0000447	GO-bp	Annotation by Michelle Graham. GO Biological Process: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	SoyBase	N/A	ISS
GO:0000461	GO-bp	Annotation by Michelle Graham. GO Biological Process: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	SoyBase	N/A	ISS
GO:0006407	GO-bp	Annotation by Michelle Graham. GO Biological Process: rRNA export from nucleus	SoyBase	N/A	ISS
GO:0006412	GO-bp	Annotation by Michelle Graham. GO Biological Process: translation	SoyBase	N/A	ISS
GO:0006606	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein import into nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0022626	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome	SoyBase	N/A	ISS
GO:0022627	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosolic small ribosomal subunit	SoyBase	N/A	ISS
GO:0030686	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: 90S preribosome	SoyBase	N/A	ISS
GO:0003735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome	SoyBase	N/A	ISS
KOG0830	KOG	40S ribosomal protein SA (P40)/Laminin receptor 1	JGI		ISS
PTHR11489	Panther	RIBOSOMAL PROTEIN S2, EUKARYOTIC AND ARCHAEAL FORM	JGI		ISS
PTHR11489:SF7	Panther	40S RIBOSOMAL PROTEIN SA	JGI		ISS
PF00318	PFAM	Ribosomal protein S2	JGI		ISS
UniRef100_C6TG12	UniRef	Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6TG12_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_O65751	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 40S ribosomal protein SA n=1 Tax=Cicer arietinum RepID=RSSA_CICAR	SoyBase	E_val: 3.00E-173	ISS

Expression Patterns of Glyma15g42150

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g42150

Paralog	Evidence	Comments
Glyma08g17000	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g42150 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g267100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g42150

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g42150

Limit To All Plant Sequences

>Glyma15g42150.1   sequence type=CDS   gene model=Glyma15g42150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGCCGCCGACTCCTCCGCCGCTCCATCGCACCAGTTGTCGCAGAGGGAGACGGACATCCAGATGATGCTCGCCGCCGACGTTCACCTCGGCACCAAAAACTGCGACTTTCAGATGGAACGCTACGTCTTCAAGCGCAGAACCGATGGTATTTACATAATTAACCTTGGCAAGACATGGGAGAAGCTCCAGCTCGCTGCTAGGATTATTGTTGCCATTGAGAACCCACAGGATATCATTGTTCAGTCTGCCAGGCCTTATGGTCAGAGGGCAGTTCTTAAGTTTGCTCAATACACTGGTGCTCATGCAATTGCCGGAAGGCACACTCCTGGAACATTCACTAATCAGATGCAGCAATCCTACAATGAGCCTCGTCTTCTGATTCTAACTGATCCAAGAACAGATCATCAGCCTATCAAGGAGGGTGCTCTTGGAAATATTCCAACTATTGCTTTTTGCGACACTGATTCTCCAATGCGGTATGTTGATGTTGGGATTCCTGCCAATAATAAGGGGAAGCATAGCATTGGTTGTCTCTTCTGGCTATTAGCTAGGATGGTACTGCAGATGCGGGGTACTATTCGTCCAGGTCACAAGTGGGATGTAATGGTGGACTTATTCTTCTATAGAGAACCTGAAGAGGCCAAGCAACAAGAGGAAGATGAAGCACCACCTGCCCAAGATTATGCCATTTCAGACTTCAATGCCGCTGGCATTGGCAGCTTCCCTGCTTCTGATGGCCAATGGCCTGCTGCAGTCGAACAACCTTGGACTGAAGAAGCACCACAACCAATCTCAGCAGCTCCTACTAACTTGACACCAGAAGCAGCTGTTGCAGGCGATTGGGGTGAGGCTGTTCCAGCTCCAGTTCCAGCTCCACAAGCTGGTGTGCCTCCAGCCCAAGCTTTTCCTCCCGCTACTGGCTGGGACTAG

Predicted protein sequences of Glyma15g42150

Limit To All Plant Sequences

>Glyma15g42150.1   sequence type=predicted peptide   gene model=Glyma15g42150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAADSSAAPSHQLSQRETDIQMMLAADVHLGTKNCDFQMERYVFKRRTDGIYIINLGKTWEKLQLAARIIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQMQQSYNEPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDVGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYREPEEAKQQEEDEAPPAQDYAISDFNAAGIGSFPASDGQWPAAVEQPWTEEAPQPISAAPTNLTPEAAVAGDWGEAVPAPVPAPQAGVPPAQAFPPATGWD*

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