Glyma15g42115 - SoyBase

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Report for Sequence Feature Glyma15g42115

Feature Type:	gene_model
Chromosome:	Gm15
Start:	49507797
stop:	49511935
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g42115

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G79250	AT	Annotation by Michelle Graham. TAIR10: AGC kinase 1.7 \| chr1:29810336-29812186 REVERSE LENGTH=555	SoyBase	E_val: 0	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0009826	GO-bp	Annotation by Michelle Graham. GO Biological Process: unidimensional cell growth	SoyBase	N/A	ISS
GO:0009827	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall modification	SoyBase	N/A	ISS
GO:0009860	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen tube growth	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG0610	KOG	Putative serine/threonine protein kinase	JGI		ISS
PTHR24351	Panther	RIBOSOMAL PROTEIN S6 KINASE	JGI		ISS
PTHR24351:SF88	Panther		JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
UniRef100_G7IT37	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein kinase n=1 Tax=Medicago truncatula RepID=G7IT37_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MJH2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MJH2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g42115

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g42115 not represented in the dataset	Glyma15g42115 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g42115

Paralog	Evidence	Comments
Glyma08g17066	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g42115 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g266800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g42115

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g42115

Limit To All Plant Sequences

>Glyma15g42115.2   sequence type=transcript   gene model=Glyma15g42115   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TATACATCTTCGCTTACAAAAAAGAACTTGATTATTTATGGTTACATGGTTTCACATTAAAGGCATTGAGCAAGAATTGAGTACTTTTGGTTTGTTATATTATGGAAAGACCAACAACTAGCTTCTTATATTAAATGAATTCCTCCTGAGGGGTGTTTTTGTGTTGCCTATTGATGACATCAAATCCTGTCAAGATGCCTGATTTACCTGAGACACAGATGGAGCACAAGTTATCAGAAGCGGCACACCCTAGTGCTCATAGTAGTAGTGCAAATTCAGGAAACAACTCACCAACTCATCCCAAGAATGTGAACCAAGAAGCAAAAGACACCAGCACAACAACTGTCCACTACTCAGGAAATGAAACTGGACATATGGACCAGGCTTCCAAAACTGAAGCAAATTTGGAAGGTAAATCCAGACCCCAGAACTTACTGCCACCAAACAGGAACTTATCTGACTTCAACCCTCAACAACACCAAAGTCCAAGCACAAAGAAGCCTAATTCAAATTCTGATCATCATGCAAAGGCAATGTCTGTGTCTACCCCTCAAACAAAGACCAGTACCAATCAAGGTCAAGGGAGTGGTGCTAGTTCTCGGAGTGATAGCTTAGAGAGCACAAGTGCACCTATTAGGCCACACACTGGGGGTGATGTGAGGTGGGAAGCTATCAACATGATTTCAAGGGTTGGCTCTCTCAATCTCAGCCATTTCAGGCTTCTCAAGCGCATCGGTTACGGAGACATTGGGAGTGTGTACCTTGTGGAACTTAAGGGAACTAGGACCTACTTTGCTATGAAAGTTATGGACAAGGCAGCTCTTATAAGCAGAAATAAGCTTCTGAGGGCACAGACAGAAAGGGAGATTCTTGGACTCCTTGATCACCCCTTCCTCCCCACTTTGTATTCTTACTTTGAAACTGATAAGTTTTATTGCTTGATCATGGAATTCTGTAGTGGGGGTGATCTTCATTCTCTAAGACAAAAGCAACCTAACAAGTGTTTCACTGAAGAAGCTGCAAGATTTTATGCTTCAGAGGTGTTGTTAGCTCTCGAGTACCTGCACATGCTTGGCATTGTATACAGAGACTTAAAGCCAGAGAATCTTCTAGTCAGAGATGAAGGGCACATAATGCTCTCAGATTTTGATTTATCCCTTCGCTGTTCCGTCAGTCCTACACTAGTCAAGTCTTCTTCCGCCCACGCAGGCAACAGTAGTAGCAGTGGCAACAATGATGTTGGAGGCATATTAACTGATGACCAAGCAGCGCAAAGCACTACTCAGGTATCAAGTTTTTTCCCGCGCATTTTGCCTTCAAAGAAAAACCGCAAGGCAAAGTCAGATTTTGGCCTATTGGTTGGTGGAGGACGCCTTCCTGAACTGATGGCAGAACCCACCAATGTGCGTTCAATGTCATTTGTAGGGACACATGAGTACCTTGCTCCTGAGATTATCAAAGGAGAGGGTCATGGTAGTGCAGTAGACTGGTGGACTTTTGGGATCTTCTTGTATGAGTTGTTGCTTGGAACGACCCCTTTCAAGGGTTCAGGATATAAAGCCACACTTTTCAATGTTGTTGGACAACCACTTAGGTTCCCAGAAACTCCCCAAGTCAGTGCTGTGGCTCGTGACCTTATTAGAGGGTTGTTGGTGAAAGAGCCTCAGAAGAGAATTGCATATAAGAGAGGAGCTACAGAGATAAAACAACACCCATTTTTTGAGGGAATGAACTGGGCTTTAGTTAGAAGTGCCACCCCTCCCCACATACCAGAGGCTATAGATTTCTCCAAGTATGCTAGCAAAGACACAGCAACCCCGGCAGACAAGAAGATGGCAGATATTGCTAATGATAAACACAGCAACAGTGCTACTGATTCTTACATAGATTTTGAGTATTTTTAGCAGTAAAAGTCCTATGGATAAAAATATACTTCTTTGACAAGAATATACTGTACAAAGTGTCACCTCTTCCCCAAAAGCAAATCGAAGAGATCTGAGAAATACACACTGTAAACAAGCATGTAAATTCGTTCAAAAACATTCTTTTTCCCTATGTTTTTTTTTTTACAATGTCTTTAATATTGTTGTAAGGACTTCCTAAGTAGCACTGTTTGCAAAGTTCAGTGTTTAGAATATGTTTTCACAATGAAAAGATG

Coding sequences of Glyma15g42115

Limit To All Plant Sequences

>Glyma15g42115.1   sequence type=CDS   gene model=Glyma15g42115   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACATCAAATCCTGTCAAGATGCCTGATTTACCTGAGACACAGATGGAGCACAAGTTATCAGAAGCGGCACACCCTAGTGCTCATAGTAGTAGTGCAAATTCAGGAAACAACTCACCAACTCATCCCAAGAATGTGAACCAAGAAGCAAAAGACACCAGCACAACAACTGTCCACTACTCAGGAAATGAAACTGGACATATGGACCAGGCTTCCAAAACTGAAGCAAATTTGGAAGGTAAATCCAGACCCCAGAACTTACTGCCACCAAACAGGAACTTATCTGACTTCAACCCTCAACAACACCAAAGTCCAAGCACAAAGAAGCCTAATTCAAATTCTGATCATCATGCAAAGGCAATGTCTGTGTCTACCCCTCAAACAAAGACCAGTACCAATCAAGGTCAAGGGAGTGGTGCTAGTTCTCGGAGTGATAGCTTAGAGAGCACAAGTGCACCTATTAGGCCACACACTGGGGGTGATGTGAGGTGGGAAGCTATCAACATGATTTCAAGGGTTGGCTCTCTCAATCTCAGCCATTTCAGGCTTCTCAAGCGCATCGGTTACGGAGACATTGGGAGTGTGTACCTTGTGGAACTTAAGGGAACTAGGACCTACTTTGCTATGAAAGTTATGGACAAGGCAGCTCTTATAAGCAGAAATAAGCTTCTGAGGGCACAGACAGAAAGGGAGATTCTTGGACTCCTTGATCACCCCTTCCTCCCCACTTTGTATTCTTACTTTGAAACTGATAAGTTTTATTGCTTGATCATGGAATTCTGTAGTGGGGGTGATCTTCATTCTCTAAGACAAAAGCAACCTAACAAGTGTTTCACTGAAGAAGCTGCAAGATTTTATGCTTCAGAGGTGTTGTTAGCTCTCGAGTACCTGCACATGCTTGGCATTGTATACAGAGACTTAAAGCCAGAGAATCTTCTAGTCAGAGATGAAGGGCACATAATGCTCTCAGATTTTGATTTATCCCTTCGCTGTTCCGTCAGTCCTACACTAGTCAAGTCTTCTTCCGCCCACGCAGGCAACAGTAGTAGCAGTGGCAACAATGATGTTGGAGGCATATTAACTGATGACCAAGCAGCGCAAAGCACTACTCAGGTATCAAGTTTTTTCCCGCGCATTTTGCCTTCAAAGAAAAACCGCAAGGCAAAGTCAGATTTTGGCCTATTGGTTGGTGGAGGACGCCTTCCTGAACTGATGGCAGAACCCACCAATGTGCGTTCAATGTCATTTGTAGGGACACATGAGTACCTTGCTCCTGAGATTATCAAAGGAGAGGGTCATGGTAGTGCAGTAGACTGGTGGACTTTTGGGATCTTCTTGTATGAGTTGTTGCTTGGAACGACCCCTTTCAAGGGTTCAGGATATAAAGCCACACTTTTCAATGTTGTTGGACAACCACTTAGGTTCCCAGAAACTCCCCAAGTCAGTGCTGTGGCTCGTGACCTTATTAGAGGGTTGTTGGTGAAAGAGCCTCAGAAGAGAATTGCATATAAGAGAGGAGCTACAGAGATAAAACAACACCCATTTTTTGAGGGAATGAACTGGGCTTTAGTTAGAAGTGCCACCCCTCCCCACATACCAGAGGCTATAGATTTCTCCAAGTATGCTAGCAAAGACACAGCAACCCCGGCAGACAAGAAGATGGCAGATATTGCTAATGATAAACACAGCAACAGTGCTACTGATTCTTACATAGATTTTGAGTATTTTTAG

>Glyma15g42115.2   sequence type=CDS   gene model=Glyma15g42115   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACATCAAATCCTGTCAAGATGCCTGATTTACCTGAGACACAGATGGAGCACAAGTTATCAGAAGCGGCACACCCTAGTGCTCATAGTAGTAGTGCAAATTCAGGAAACAACTCACCAACTCATCCCAAGAATGTGAACCAAGAAGCAAAAGACACCAGCACAACAACTGTCCACTACTCAGGAAATGAAACTGGACATATGGACCAGGCTTCCAAAACTGAAGCAAATTTGGAAGGTAAATCCAGACCCCAGAACTTACTGCCACCAAACAGGAACTTATCTGACTTCAACCCTCAACAACACCAAAGTCCAAGCACAAAGAAGCCTAATTCAAATTCTGATCATCATGCAAAGGCAATGTCTGTGTCTACCCCTCAAACAAAGACCAGTACCAATCAAGGTCAAGGGAGTGGTGCTAGTTCTCGGAGTGATAGCTTAGAGAGCACAAGTGCACCTATTAGGCCACACACTGGGGGTGATGTGAGGTGGGAAGCTATCAACATGATTTCAAGGGTTGGCTCTCTCAATCTCAGCCATTTCAGGCTTCTCAAGCGCATCGGTTACGGAGACATTGGGAGTGTGTACCTTGTGGAACTTAAGGGAACTAGGACCTACTTTGCTATGAAAGTTATGGACAAGGCAGCTCTTATAAGCAGAAATAAGCTTCTGAGGGCACAGACAGAAAGGGAGATTCTTGGACTCCTTGATCACCCCTTCCTCCCCACTTTGTATTCTTACTTTGAAACTGATAAGTTTTATTGCTTGATCATGGAATTCTGTAGTGGGGGTGATCTTCATTCTCTAAGACAAAAGCAACCTAACAAGTGTTTCACTGAAGAAGCTGCAAGATTTTATGCTTCAGAGGTGTTGTTAGCTCTCGAGTACCTGCACATGCTTGGCATTGTATACAGAGACTTAAAGCCAGAGAATCTTCTAGTCAGAGATGAAGGGCACATAATGCTCTCAGATTTTGATTTATCCCTTCGCTGTTCCGTCAGTCCTACACTAGTCAAGTCTTCTTCCGCCCACGCAGGCAACAGTAGTAGCAGTGGCAACAATGATGTTGGAGGCATATTAACTGATGACCAAGCAGCGCAAAGCACTACTCAGGTATCAAGTTTTTTCCCGCGCATTTTGCCTTCAAAGAAAAACCGCAAGGCAAAGTCAGATTTTGGCCTATTGGTTGGTGGAGGACGCCTTCCTGAACTGATGGCAGAACCCACCAATGTGCGTTCAATGTCATTTGTAGGGACACATGAGTACCTTGCTCCTGAGATTATCAAAGGAGAGGGTCATGGTAGTGCAGTAGACTGGTGGACTTTTGGGATCTTCTTGTATGAGTTGTTGCTTGGAACGACCCCTTTCAAGGGTTCAGGATATAAAGCCACACTTTTCAATGTTGTTGGACAACCACTTAGGTTCCCAGAAACTCCCCAAGTCAGTGCTGTGGCTCGTGACCTTATTAGAGGGTTGTTGGTGAAAGAGCCTCAGAAGAGAATTGCATATAAGAGAGGAGCTACAGAGATAAAACAACACCCATTTTTTGAGGGAATGAACTGGGCTTTAGTTAGAAGTGCCACCCCTCCCCACATACCAGAGGCTATAGATTTCTCCAAGTATGCTAGCAAAGACACAGCAACCCCGGCAGACAAGAAGATGGCAGATATTGCTAATGATAAACACAGCAACAGTGCTACTGATTCTTACATAGATTTTGAGTATTTTTAG

Predicted protein sequences of Glyma15g42115

Limit To All Plant Sequences

>Glyma15g42115.1   sequence type=predicted peptide   gene model=Glyma15g42115   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTSNPVKMPDLPETQMEHKLSEAAHPSAHSSSANSGNNSPTHPKNVNQEAKDTSTTTVHYSGNETGHMDQASKTEANLEGKSRPQNLLPPNRNLSDFNPQQHQSPSTKKPNSNSDHHAKAMSVSTPQTKTSTNQGQGSGASSRSDSLESTSAPIRPHTGGDVRWEAINMISRVGSLNLSHFRLLKRIGYGDIGSVYLVELKGTRTYFAMKVMDKAALISRNKLLRAQTEREILGLLDHPFLPTLYSYFETDKFYCLIMEFCSGGDLHSLRQKQPNKCFTEEAARFYASEVLLALEYLHMLGIVYRDLKPENLLVRDEGHIMLSDFDLSLRCSVSPTLVKSSSAHAGNSSSSGNNDVGGILTDDQAAQSTTQVSSFFPRILPSKKNRKAKSDFGLLVGGGRLPELMAEPTNVRSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLLGTTPFKGSGYKATLFNVVGQPLRFPETPQVSAVARDLIRGLLVKEPQKRIAYKRGATEIKQHPFFEGMNWALVRSATPPHIPEAIDFSKYASKDTATPADKKMADIANDKHSNSATDSYIDFEYF*

>Glyma15g42115.2   sequence type=predicted peptide   gene model=Glyma15g42115   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTSNPVKMPDLPETQMEHKLSEAAHPSAHSSSANSGNNSPTHPKNVNQEAKDTSTTTVHYSGNETGHMDQASKTEANLEGKSRPQNLLPPNRNLSDFNPQQHQSPSTKKPNSNSDHHAKAMSVSTPQTKTSTNQGQGSGASSRSDSLESTSAPIRPHTGGDVRWEAINMISRVGSLNLSHFRLLKRIGYGDIGSVYLVELKGTRTYFAMKVMDKAALISRNKLLRAQTEREILGLLDHPFLPTLYSYFETDKFYCLIMEFCSGGDLHSLRQKQPNKCFTEEAARFYASEVLLALEYLHMLGIVYRDLKPENLLVRDEGHIMLSDFDLSLRCSVSPTLVKSSSAHAGNSSSSGNNDVGGILTDDQAAQSTTQVSSFFPRILPSKKNRKAKSDFGLLVGGGRLPELMAEPTNVRSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLLGTTPFKGSGYKATLFNVVGQPLRFPETPQVSAVARDLIRGLLVKEPQKRIAYKRGATEIKQHPFFEGMNWALVRSATPPHIPEAIDFSKYASKDTATPADKKMADIANDKHSNSATDSYIDFEYF*

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