SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G12670 | AT | Annotation by Michelle Graham. TAIR10: CTP synthase family protein | chr3:4020351-4024086 REVERSE LENGTH=591 | SoyBase | E_val: 0 | ISS |
| GO:0000478 | GO-bp | Annotation by Michelle Graham. GO Biological Process: endonucleolytic cleavage involved in rRNA processing | SoyBase | N/A | ISS |
| GO:0006221 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pyrimidine nucleotide biosynthetic process | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0046686 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cadmium ion | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0003883 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: CTP synthase activity | SoyBase | N/A | ISS |
| KOG2387 | KOG | CTP synthase (UTP-ammonia lyase) | JGI | ISS | |
| PTHR11550 | Panther | CTP SYNTHASE | JGI | ISS | |
| PF00117 | PFAM | Glutamine amidotransferase class-I | JGI | ISS | |
| PF06418 | PFAM | CTP synthase N-terminus | JGI | ISS | |
| UniRef100_A2Q3J8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Glutamine amidotransferase, class I, active site n=1 Tax=Medicago truncatula RepID=A2Q3J8_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MJH0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MJH0_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma15g42080 not represented in the dataset |
Glyma15g42080 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma08g17120 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g266600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g42080.1 sequence type=CDS gene model=Glyma15g42080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGTATGTGTTGGTGACTGGTGGTGTTGTGAGTGGACTTGGGAAAGGAGTCACTGCCAGCAGTATTGGGTTAATCCTCAAGGCCTGTGGTCTTAGAGTTACCTCTATCAAGATTGACCCCTACTTGAACACTGATGCGGGAACTATGTCTCCTTTTGAGCATGGAGAGGTTTTTGTCTTAGATGATGGTGGTGAGGTTGACCTTGATCTTGGAAACTATGAACGTTTCTTGGACATCAAATTAACTTGTGACAATAATATCACTACTGGAAAAATATATCAGTCTGTTATTGAGAAGGAGAGAAGAGGAGATTATCTTGGAAAGACTGTACAGGTTGTTCCGCACGTAACAGATGCTATCCAAGAGTGGATAGAACGTGTAGCAAAGATACCAGTTGATGGGAAAGAAGGGCCAGCTGATGTTTGTGTCATTGAATTGGGTGGAACTATAGGGGATATTGAGTCCATGCCTTTTATTGAAGCACTTGGTCAATTCTCATACCGTGTAGGCCCTGGCAACTTCTGTTTGGTTCATGTCAGCCTGGTTCCTATTCTCCATGTTGTTGGTGAACCGAAAACAAAGCCAACTCAGCACAGTGTTCGTCAACTTAGAGGATTAGGTTTGACCCCTAATCTTCTTGCTTGTCGCAGTTCGAAGGAACTTGATGACAATGTCAAGGCAAAACTTGCTCAATTCTGTCATGTGCCGTTGTCAAACATACTTACTCTCCATGACGTTCCAAATATTTGGCACATTCCTTTGCTATTGAAAGACCAGAAGGCACATGAGGCGATCCTGAAAGCATTAAACTTGCTAGGTGTTGCTGCAGAGCCTAATTTGAAGGAGTGGACTTCAAGGACAAAAGTTTATGACAGATGTCATGAAATTGTTAGAATTGCAATGGTGGGAAAATACACTGGCCTTTCAGATGCATATCTTTCTGTTCTGAAGGCACTTTTACATGCTTCTGTTGCTCGAAACCGTAAACTTATTGTGGACTGGGTTCCAGCTGGGGATCTTGAAGATGCTACTTATAATGAGGATCCTGAGGCATATAAAGCTGCTTGGAGTCTTTTAAAGGGTGCTAATGGGGTTCTAGTTCCAGGAGGTTTTGGTGATAGAGGAGTGCAAGGGAAAATTCTTGCTGCTAAGTATGCTCGAGAACATAATGTTCCATTTCTCGGCATTTGCCTGGGAATGCAAATTGCTGTTATTGAGTTTGCACGATCTGTTCTCGGTCTGCATGATGCTACTAGCACAGAATTCAATCCTGAAACCAAGACCCCTTGTGTCATATTTATGCCAGAAGGCTCAAAGACTCATATGGGAGGAACTATGCGTCTTGGCTCAAGAAGAACTTACTTTGAAGTTGCTGACTGCAAATCCGCAAAATTGTATGGCAATGTAAGCTTTGTTGATGAGCGACATCGGCATAGATATGAGGTTAATCCTGACATGATATCACCGCTAGAGAATGCTGGTCTATCTTTTGTTGGCAAAGATGAAACTGGGAGGCGTATGGAGATAGTTGAGTTGCCTAGCCATCCTTTTTTTATTGGCGTTCAGTTTCACCCTGAGTTCAAGTCCAGACCAGGGAAACCTTCTCCGCTCTTCTCAGGATTAATAGCAGCAGCAAGTGAATCTAGGAGGACAATCATGGTGCCAAGTAATGGTCACGCCAAGTTAACTAATGGAAATGGAATGTGCAATGGACACTCACCAAAACTGAAAGCACACCAAAAGGGAAATGGCTTCAATTCATCCAATGGTTCCTTAAATGGTATATATACCAATGGCAATGGGGTGTATGTGGATGGTAGTTGTTAG
>Glyma15g42080.1 sequence type=predicted peptide gene model=Glyma15g42080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKYVLVTGGVVSGLGKGVTASSIGLILKACGLRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDIKLTCDNNITTGKIYQSVIEKERRGDYLGKTVQVVPHVTDAIQEWIERVAKIPVDGKEGPADVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLVHVSLVPILHVVGEPKTKPTQHSVRQLRGLGLTPNLLACRSSKELDDNVKAKLAQFCHVPLSNILTLHDVPNIWHIPLLLKDQKAHEAILKALNLLGVAAEPNLKEWTSRTKVYDRCHEIVRIAMVGKYTGLSDAYLSVLKALLHASVARNRKLIVDWVPAGDLEDATYNEDPEAYKAAWSLLKGANGVLVPGGFGDRGVQGKILAAKYAREHNVPFLGICLGMQIAVIEFARSVLGLHDATSTEFNPETKTPCVIFMPEGSKTHMGGTMRLGSRRTYFEVADCKSAKLYGNVSFVDERHRHRYEVNPDMISPLENAGLSFVGKDETGRRMEIVELPSHPFFIGVQFHPEFKSRPGKPSPLFSGLIAAASESRRTIMVPSNGHAKLTNGNGMCNGHSPKLKAHQKGNGFNSSNGSLNGIYTNGNGVYVDGSC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
