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Report for Sequence Feature Glyma15g42060

Feature Type:gene_model
Chromosome:Gm15
Start:49442900
stop:49443798
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g42060
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G09020AT Annotation by Michelle Graham. TAIR10: homolog of yeast sucrose nonfermenting 4 | chr1:2900149-2904212 REVERSE LENGTH=487 SoyBaseE_val: 7.00E-36ISS
GO:0042149GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to glucose starvation SoyBaseN/AISS
GO:0046777GO-bp Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0004674GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0030295GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activator activity SoyBaseN/AISS
PTHR13780Panther AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT JGI ISS
PTHR13780:SF13Panther AMP-ACTIVATED PROTEIN KINASE-RELATED JGI ISS
PF00571PFAM CBS domain JGI ISS
UniRef100_G7JKB3UniRef Annotation by Michelle Graham. Most informative UniRef hit: 5'-AMP-activated protein kinase subunit gamma n=1 Tax=Medicago truncatula RepID=G7JKB3_MEDTR SoyBaseE_val: 4.00E-40ISS
UniRef100_UPI000233815DUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233815D related cluster n=1 Tax=unknown RepID=UPI000233815D SoyBaseE_val: 5.00E-47ISS

Expression Patterns of Glyma15g42060
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g42060 not represented in the dataset
Glyma15g42060 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g42060 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma15g42060
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma15g42060
>Glyma15g42060.1   sequence type=CDS   gene model=Glyma15g42060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATATCAGATACTGATGTACAGATATCCCGTCAGTGTATTTCTGCATTTCTATCTTCACACACCGCTTATGAATTACTTCCCGAGTCAGGCAAGGTTGTTGCTTTGGATGTTGATCTACCAGTGAAACAGGCATTTCATATATTGCATGAGCAGGGAGTTTTCATGGCTCCTCTTTGGGACTTCTGCAAGGGGCAATTTGTTGGTGTTCTTAGTGCTTCGGATTTTATTTTAATTTTAAGAGAGCTTTCTGAATACAATGCTTTTATGGTGATGATTTGTGATGCTAAGAGGTATGACAAGTTACAAAACCTGGTAATGAAAGGAAAAGGCAAAAAAGAAAAATGTGTGAAAAACTTGTATGATTTATTTTTTAGCTTTTAG
Predicted protein sequences of Glyma15g42060
>Glyma15g42060.1   sequence type=predicted peptide   gene model=Glyma15g42060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ISDTDVQISRQCISAFLSSHTAYELLPESGKVVALDVDLPVKQAFHILHEQGVFMAPLWDFCKGQFVGVLSASDFILILRELSEYNAFMVMICDAKRYDKLQNLVMKGKGKKEKCVKNLYDLFFSF*






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