Glyma15g42005 - SoyBase

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Report for Sequence Feature Glyma15g42005

Feature Type:	gene_model
Chromosome:	Gm15
Start:	49317146
stop:	49317957
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g42005

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
UniRef100_G7J8H8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Myb-like transcription factor n=1 Tax=Medicago truncatula RepID=G7J8H8_MEDTR	SoyBase	E_val: 5.00E-08	ISS
UniRef100_G7KV70	UniRef	Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Medicago truncatula RepID=G7KV70_MEDTR	SoyBase	E_val: 2.00E-11	ISS

Expression Patterns of Glyma15g42005

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g42005 not represented in the dataset	Glyma15g42005 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g42005 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g266000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g42005

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g42005

Limit To All Plant Sequences

>Glyma15g42005.1   sequence type=CDS   gene model=Glyma15g42005   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATGCGTGCTTTGACTTGAAAAACTTAACACTTGGGGTAAAGGGTTTTCCTATGTGTGGCCTTTACCTAACTCAACATGAAAAACATTATTGGAGCGATTATGAGAAATGGACTCCTAAATCAATTTGGGTGGCAACGATTTGGTCTACTTGGAAGCATAGGAATGGAGTAGTATTTAATATTAAAAGTTCTGATTTGCTCTCACTGGTGGATCATATCAAATTATTCTCATGGAGTTGGCTTAAAGGTAAGGAGCAGAATTTCTTGTGCAGTTTTCATGACTGGGAATCAAATCCTTTACTCTGCATCTCTAGCCTTAGCAAATCCCCGAGGAGACCACTAATATGTGCGAAGAACTAG

Predicted protein sequences of Glyma15g42005

Limit To All Plant Sequences

>Glyma15g42005.1   sequence type=predicted peptide   gene model=Glyma15g42005   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNACFDLKNLTLGVKGFPMCGLYLTQHEKHYWSDYEKWTPKSIWVATIWSTWKHRNGVVFNIKSSDLLSLVDHIKLFSWSWLKGKEQNFLCSFHDWESNPLLCISSLSKSPRRPLICAKN*

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