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Report for Sequence Feature Glyma15g42000

Feature Type:gene_model
Chromosome:Gm15
Start:49314833
stop:49316213
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g42000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G18370AT Annotation by Michelle Graham. TAIR10: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr2:7980687-7981475 FORWARD LENGTH=116 SoyBaseE_val: 3.00E-38ISS
GO:0006869GO-bp Annotation by Michelle Graham. GO Biological Process: lipid transport SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0008289GO-mf Annotation by Michelle Graham. GO Molecular Function: lipid binding SoyBaseN/AISS
PF00234PFAM Protease inhibitor/seed storage/LTP family JGI ISS
UniRef100_G7IQQ8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Non-specific lipid-transfer protein n=1 Tax=Medicago truncatula RepID=G7IQQ8_MEDTR SoyBaseE_val: 5.00E-56ISS
UniRef100_I1KTU5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KTU5_SOYBN SoyBaseE_val: 5.00E-72ISS

Expression Patterns of Glyma15g42000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g42000 not represented in the dataset
Glyma15g42000 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g42000
ParalogEvidenceComments
Glyma08g17190 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g42000 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g265900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma15g42000
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma15g42000
>Glyma15g42000.1   sequence type=CDS   gene model=Glyma15g42000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAATCTTCAGGAGCATTAGCTACCCTTGTGCTTCTGATCCTTCTTCTTGCGTCAACTTCAGAGGCTGCAATTTCATGTAGTGATGTGATCAAGGACTTGAGGCCATGTGTGAGCTACTTGGTGAGTGGCAGTGGACAGCCACCAGCTGCTTGTTGCTCAGGAGCTAAGGCTCTTGCCTCTGCTGCAACAACCTCAGAGGACAAGAAGGCTGCTTGTAACTGCATCAAATCCACTTCCAAGAGTATCAACATTAACTCACAGTTGGCTCAGGCTCTTCCAGGGAACTGTGGAATAACCCTTCCTGTGGCTATCTCTCCCAATGCTGATTGTTCCAAGGTGGGTTGA
Predicted protein sequences of Glyma15g42000
>Glyma15g42000.1   sequence type=predicted peptide   gene model=Glyma15g42000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKSSGALATLVLLILLLASTSEAAISCSDVIKDLRPCVSYLVSGSGQPPAACCSGAKALASAATTSEDKKAACNCIKSTSKSININSQLAQALPGNCGITLPVAISPNADCSKVG*






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