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Report for Sequence Feature Glyma15g41986

Feature Type:gene_model
Chromosome:Gm15
Start:49297049
stop:49297990
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g41986
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G05590AT Annotation by Michelle Graham. TAIR10: beta-hexosaminidase 2 | chr1:1669871-1671686 FORWARD LENGTH=580 SoyBaseE_val: 3.00E-170ISS
GO:0005975GO-bp Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0004553GO-mf Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds SoyBaseN/AISS
GO:0004563GO-mf Annotation by Michelle Graham. GO Molecular Function: beta-N-acetylhexosaminidase activity SoyBaseN/AISS
GO:0015929GO-mf Annotation by Michelle Graham. GO Molecular Function: hexosaminidase activity SoyBaseN/AISS
GO:0035251GO-mf Annotation by Michelle Graham. GO Molecular Function: UDP-glucosyltransferase activity SoyBaseN/AISS
GO:0043169GO-mf Annotation by Michelle Graham. GO Molecular Function: cation binding SoyBaseN/AISS
PTHR22600Panther BETA-HEXOSAMINIDASE JGI ISS
PF00728PFAM Glycosyl hydrolase family 20, catalytic domain JGI ISS
UniRef100_G7IQQ5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Beta-hexosaminidase subunit beta n=1 Tax=Medicago truncatula RepID=G7IQQ5_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000233C12EUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233C12E related cluster n=1 Tax=unknown RepID=UPI000233C12E SoyBaseE_val: 0ISS

Expression Patterns of Glyma15g41986
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g41986 not represented in the dataset
Glyma15g41986 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g41986
ParalogEvidenceComments
Glyma08g17200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g41986 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g265700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma15g41986
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma15g41986
>Glyma15g41986.1   sequence type=CDS   gene model=Glyma15g41986   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGGGCACACTGGATCTTGGGCTTTAGCCTACCCAGAAATTGTAACATGTGCCAACATGTTCTGGTGGCCAGCAGAAGGTGATATAATTGCTGCAGAACCAGGAACAGGTCATTTGAACCCTCTAAACCCCAAGACTTACCAAGTCCTAAAGAATGTAATACGTGACACGACCACATTGTTCCCCGAACCATTTTACCACTCAGGTGCTGATGAAATTGTACCAGGTTGCTGGAAAACTGATCCCACAATTCAGAAGTATCTATCAAACGGTGGAACTCTCAGCCAAGTTCTTGAGAAGTTCATCAACAACACTCTCCCTTTCATCGTGTCCCTCAACCGAACCGTCGTCTATTGGGAAGATGTTTTGCTGTCTGAAACAGTCCATGTGCCATCCACAATTCTTCCCAAGGAGCATGTGGTTTTGCAGACATGGAACAATGGACACAACAACACCAAAAGGATTGTTTCTTCGGGGTACCGCGCCATTGTGTCGTCATCAGACTTCTACTATCTGGATTGTGGCCATGGTGGCTTTGTGGGGAATAACAGTATCTATGATCAGCAAAATGGGGGTGACAAAGACAGTGGTGGCTCTTGGTGTGGACCTTTTAAGACATGGCAAACCATATACAATTATGATATAGCATATGGGTTGAGTGAGGAAGAAGAAAAGTTGGTTTTGGGTGGGGAGGTGGCACTGTGGACAGAACAAGCTGATTCAACTGTTTTGGATGGAAGAATTTGGCCAAGAAGTTCTGCATTGGCTGAGTCATTGTGGTCAGAAAATAGGGATGAAAAGGGTATGAAGAGATATGCAGAGGCCACAGATAGACTCAATGAATGGAGAAGCAGAATGGTAAGTAGAGGAATAGGTGCTGAGCCCATTCAGCCACTTTGGTCTGTTAGGAACCCTGGAATGTGCAACACTGTTCACTAA
Predicted protein sequences of Glyma15g41986
>Glyma15g41986.1   sequence type=predicted peptide   gene model=Glyma15g41986   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGHTGSWALAYPEIVTCANMFWWPAEGDIIAAEPGTGHLNPLNPKTYQVLKNVIRDTTTLFPEPFYHSGADEIVPGCWKTDPTIQKYLSNGGTLSQVLEKFINNTLPFIVSLNRTVVYWEDVLLSETVHVPSTILPKEHVVLQTWNNGHNNTKRIVSSGYRAIVSSSDFYYLDCGHGGFVGNNSIYDQQNGGDKDSGGSWCGPFKTWQTIYNYDIAYGLSEEEEKLVLGGEVALWTEQADSTVLDGRIWPRSSALAESLWSENRDEKGMKRYAEATDRLNEWRSRMVSRGIGAEPIQPLWSVRNPGMCNTVH*






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