Glyma15g41980 - SoyBase

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Report for Sequence Feature Glyma15g41980

Feature Type:	gene_model
Chromosome:	Gm15
Start:	49277163
stop:	49279498
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g41980

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G12770	AT	Annotation by Michelle Graham. TAIR10: P-loop containing nucleoside triphosphate hydrolases superfamily protein \| chr1:4351888-4353543 FORWARD LENGTH=551	SoyBase	E_val: 0	ISS
GO:0009663	GO-bp	Annotation by Michelle Graham. GO Biological Process: plasmodesma organization	SoyBase	N/A	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0010497	GO-bp	Annotation by Michelle Graham. GO Biological Process: plasmodesmata-mediated intercellular transport	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003724	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA helicase activity	SoyBase	N/A	ISS
GO:0004386	GO-mf	Annotation by Michelle Graham. GO Molecular Function: helicase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0008026	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP-dependent helicase activity	SoyBase	N/A	ISS
KOG0327	KOG	Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases	JGI		ISS
PTHR24031	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24031:SF8	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00270	PFAM	DEAD/DEAH box helicase	JGI		ISS
PF00271	PFAM	Helicase conserved C-terminal domain	JGI		ISS
UniRef100_D5KXM9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Increased size exclusion limit 1a n=1 Tax=Nicotiana benthamiana RepID=D5KXM9_NICBE	SoyBase	E_val: 0	ISS
UniRef100_UPI000233BE80	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233BE80 related cluster n=1 Tax=unknown RepID=UPI000233BE80	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g41980

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g41980

Paralog	Evidence	Comments
Glyma08g17220	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g41980 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g265600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g41980

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g41980

Limit To All Plant Sequences

>Glyma15g41980.1   sequence type=CDS   gene model=Glyma15g41980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCAACTTTGATTTCATATAGGTTTCTTTTGCTTGTTGGAGAGTCACTCCACATGAGAAGGGCTTTGGCCACTTCTAGGTCTGTTTTATTGCACACTAGTGTCAAGTGTATGAGCCAGGTGGAACCCCATCATGGTTCCCTAACCGTCTCTGGCATAGGTTTACAAACTGAAACTGAACCCAGAAACAGAAGCAAAACAAATAAGGTTAAGCCATTGGGTTCACCCTCTGAGAATCGCAAGAGCAAAGGAAAGCCCTTAGGCATTAATGAGAAGAAGAAGAAAGCTTTTAGGGTTGTAGAGAAACAGCAAATAGAGTCTGCCCCTTTTGCTGCAGAGTCATTTTCAGAACTTGGCCTCCCACATGTGTTGATTGAGAGGCTAGAGAAGGAGGGTTTCACCGTGCCGACCGAAGTTCAGTCTGCTGCAGTTCCCACCATTCTGAACAACCATGATGTCATAATTCAGTCTTACACGGGTTCAGGGAAGACATTGGCTTATCTGCTTCCTATACTTTCAGTTGTTGGGCCGCTGAGGGGGAAAACTCCTGAAGGCAACAGTGATGGTGGGGAGAGTGGGAAGAAGTTGGGAATTGAAGCAGTGATTGTTGCTCCTTCTAGGGAGCTTGGAATGCAGATAGTGAGGGAGTTTGAGAAGGTGCTAGGAATGGATAACAAGAGAGTGGTTCAGCAGCTTGTGGGGGGTGCAAACCGAACCAGGCAGGAAGATGCTCTCAAGAAAAATAAGCCTGCAATTGTTGTTGGCACACCTGGTAGGATAGCTGAGCTCAGTGCATCCGGGAAACTTCGCACTCATGGCTGTCGATATTTGGTATTAGATGAAGTTGATGAACTCTTGTCATTCAATTTCCGGGAAGACATGCACCGGATATTGGAGCATGTAGGGAGGAGATCAGGTGCAGACCCAAACTCAGATTCTAGAAAGGCTGAACGTCAGTTAATTATGGTTTCTGCAACTGTGCCGTTTTCTGTTGTAAGGGCAGCTAGGAGCTGGGGTTGTGACCCACTTCTTGTCCAAGCTAACAAAGTTGCCCCACTTGAAACTGTCTCTCCCTCTGAACCCATCAGTTTGTCTCGGTCTTCACCCAGCTCAAGCCCTAGCTCGGCTATGCCATCTCCGGCAGCAGTAGAGAGTCTACCTCCTGCATTGAAACACTATTACTTTGTAACAAGGGTGCAGCACAAAGTTGATGTGTTGAGAAGGTGTATTCATGCACTGGATGCCAAATTTGTGATAGCTTTCATGAACCATACTAAGCAGCTAAAGGATGTTGTCTTCAAGCTGGAGGCCCGTGGGATGAAAGCCATGGAGTTACATGGGGATCTTGGGAAGCTAGCTAGGTCAACAACTCTGAAGAAATTCAAAAATGGTGAGGTGAGAGTTCTGGTTACAAATGAATTATCAGCAAGGGGTTTGGATGTGGCAGAATGTGATCTTGTGGTTAATCTAGACTTACCGACAGATTCAATTCACTATGCACACCGAGCTGGCCGAACTGGTCGGCTAGGTAGGAATGGTACAGTGGTAACCATATGTGAAGAGTCAGAAGTGTTTGTTGTAAAGAAATTGCAGAAGCAGCTAGCAATACCAATTGCAGCCTGTGATTTTGCAGAGGGGAAGTTTCTCGTCACTGAGGAAGAGAAAACAGTAAGCACTTCTCAAAGATGA

Predicted protein sequences of Glyma15g41980

Limit To All Plant Sequences

>Glyma15g41980.1   sequence type=predicted peptide   gene model=Glyma15g41980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPTLISYRFLLLVGESLHMRRALATSRSVLLHTSVKCMSQVEPHHGSLTVSGIGLQTETEPRNRSKTNKVKPLGSPSENRKSKGKPLGINEKKKKAFRVVEKQQIESAPFAAESFSELGLPHVLIERLEKEGFTVPTEVQSAAVPTILNNHDVIIQSYTGSGKTLAYLLPILSVVGPLRGKTPEGNSDGGESGKKLGIEAVIVAPSRELGMQIVREFEKVLGMDNKRVVQQLVGGANRTRQEDALKKNKPAIVVGTPGRIAELSASGKLRTHGCRYLVLDEVDELLSFNFREDMHRILEHVGRRSGADPNSDSRKAERQLIMVSATVPFSVVRAARSWGCDPLLVQANKVAPLETVSPSEPISLSRSSPSSSPSSAMPSPAAVESLPPALKHYYFVTRVQHKVDVLRRCIHALDAKFVIAFMNHTKQLKDVVFKLEARGMKAMELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRNGTVVTICEESEVFVVKKLQKQLAIPIAACDFAEGKFLVTEEEKTVSTSQR*

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