SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G79280 | AT | Annotation by Michelle Graham. TAIR10: nuclear pore anchor | chr1:29819176-29832809 REVERSE LENGTH=2093 | SoyBase | E_val: 0 | ISS |
| GO:0000226 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization | SoyBase | N/A | ISS |
| GO:0006606 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein import into nucleus | SoyBase | N/A | ISS |
| GO:0009910 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of flower development | SoyBase | N/A | ISS |
| GO:0016973 | GO-bp | Annotation by Michelle Graham. GO Biological Process: poly(A)+ mRNA export from nucleus | SoyBase | N/A | ISS |
| GO:0033234 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of protein sumoylation | SoyBase | N/A | ISS |
| GO:0048443 | GO-bp | Annotation by Michelle Graham. GO Biological Process: stamen development | SoyBase | N/A | ISS |
| GO:0051322 | GO-bp | Annotation by Michelle Graham. GO Biological Process: anaphase | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005635 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nuclear envelope | SoyBase | N/A | ISS |
| GO:0005643 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nuclear pore | SoyBase | N/A | ISS |
| GO:0005730 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleolus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| KOG4674 | KOG | Uncharacterized conserved coiled-coil protein | JGI | ISS | |
| PF07926 | PFAM | TPR/MLP1/MLP2-like protein | JGI | ISS | |
| UniRef100_G7IT80 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Nuclear-pore anchor n=1 Tax=Medicago truncatula RepID=G7IT80_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233BE7E | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233BE7E related cluster n=1 Tax=unknown RepID=UPI000233BE7E | SoyBase | E_val: 0 | ISS |
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Glyma15g41950 not represented in the dataset |
Glyma15g41950 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma08g17255 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g265300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g41950.1 sequence type=CDS gene model=Glyma15g41950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCTCTCTTCCTCTCCGACGAGGAGTTCGCGCGGTGCTCCGGCGACGGCGCCGCCGTGGCCGCGAAGGCCGACGCCTTCATCCGCGGCCTCCTCCACGAGCTCGACACCGTCCGCGCCAAGGCCGACGCAGCCGACATTAACGCCGAGCAGAACTGCTCCCTCATCGAGCAGAAGTACCTCTCCCTCACCGCCGAGTTCTCCAAACTCGAGTCGAACGTCGCCGAACTTCAATCCTCTCTCGATCAGCGCCTCCGCGAAATCGCCGAGGTGCAATCGCAGAACCATCGAATCCAATTGCAATTGGTCGAGAAAGATAGGGAGATAGAGCGGTTGAGGACGGAGGTTGCGGAGTTGCACAAGTCGAAGAGGCAGTTGCTTGAGTTGAACGAGCAGAAGGATTTGGAGCTAAGTGAGAAGAATGCAACCATGAAGAGTTATCTTGATAAGATTGTTCGTTTAAGTGAAAATGCTGCTCATAAGGAGGCGCGGTTGAGTGAAGTTGAGGCAGAAATGGCACGGTGCCGGGCTGCTTGCACTCGCTTTGAACAGGAGAAGGAGATTGTTGAGAGGCAGAATTCTTGGCTCAACGAGGAGTTGAATGCTAAAGTTAACATTGTTTTTGAGCTGCGCAGAAAGCACACAGAATATGAAGCTGATATGACTTCCAAGCTTGCAGATATGCAGAGACAGTTTGGTGAAAGCTCTAAATCTCTACAGTGGAATAAGGATAGAGTGAGGGAACTTGAAATGAAGCTTAAATCTGTGCAGGAGGAATTAATTTCTGCTAAAGATGTTGCTGCAGCCAACGAAGAACAATTATCTGCTGAACTCTCCACTGTTAATAAGCTTAATGAGCTATATAAAGAGAGTTCCGAGGAATGGTCAAAAAAAGCTGCAGACCTAGAGGGCGTGATAAAAGCAATGGAGTCACACCAAAAGCAAGTTGAAGATGATTATAAAGAGAAACTTGAGAAGGAATTATCTGCCAGAAAACAGGTTGAAAAGGAGGCCACTGATTTAAAAGAAAGGCTTGAGAAGTGTGAAGCTGAAATTGAGACAAGGAAGAAGACTGATGGAGTGAATAATCTTCCCCTTAGCAGTTTTGCTACTGAATCGTGGATGGAATCAATTGAAGCCGATAGCATGGTTGAGGAAAATAGCTTGCTAGTCCCAAGAATTCCTGTTGGAGTTTCTGGAACTGCATTGGCTGCTTCACTTCTGCGAGATGGGTGGAGTTTGGCCAAAATGTATGCAAAATACCAAGAGGTGGTTGATGCATTGAGGCACGAACAATTGGGAAGGAAGGAGTCAGAAGCAGTACTGCAACGGGTTCTATATGAGTTAGAGCAGAAAGCAGAAGCAATTTTAGATGAAAGAGTGGAACATGACAAGATGGCTGATGCATACTCCTTGATGAACCAAAAATTGCAAAACTCCCTGAATGAAAATTCCAACTTAGAGAAAACCATCCAGGAACTAAAGGCTGATCTGAAAAGGCGTGAACGGGATTATAATCTTGTCCTGAAAGAAACTGATGACCTTCAAAAACAGGTTACAGTACTTCTGAAGGAATGCCGAGACATACAACTTCGTTGTGGCTCAATGGGGTATGATATTGTTGATGATGCTTCAAATATTGCTTCAAGGACAAGTAGAGAGACTGAAGCTGAAGATGTCATATCAGAGCACCTTTTGACCTTCAAGGACATTAACGGACTAGTTGAGCAGAATGTTCAACTTAGAAGCCTTGTACGTAGTATTTCTGGCCATATTGAAAATCAGGAAGTGGAGTTCAAGGAGAAGCTTGAAATGGAACTCAAAAAACATACTGAAGAATCTGCTTCTAAAGTTGCAGCTGTTCTGCAGAGAGCAGAAGAGCAAGGTCACATGATTGAAGCGCTTCATGCATCTGTTGCGATGTATAAGAGGTTGTATGAGGAGGAGCATAATCTTCATTTATCTCATACCCATTCCTCAGAAGCTCTTGCAGCTGTTGCGGCAGTTGGAAGAAACAACATTAAGACTTCAATTGAAAGTTCACAGGAGGCTGCTAAGAAGTCCCTGGAAAAAGCTGCTGAGCGTGTGAGATGCCTTGAGGATGATTTAGCAAAGTCTAGGAGTGAGATTATTGTATTACGATCAGAACGTGACAAGAGTGCACTTGAAGCAAATTTTGCTAGAGAGAAACTTAATGACATTATGAAAGAATTTGAACATCAGAAAACTGAAGCAAAAGGCATTTTAGAAAGAAATATTGAGTTTTCTCAGCTGGTTGTTGACTACCAACGAAAATTGCGTGAAAGCACTGAGTCATTGATTGCTGCTGAGGAGCTTTCGCGGAAACTTTCTATGGAGCTGTCAGTTTTAAAGCAAGAAAAGGAAGTCATATCAAATGCTGAAAAAAGGGCATCCGATGAAGTTCACAGTTTGTCTGCAAGGGTGCAGCGTTTGCAGGCTAGTTTGAGTACCATACAGAGTACTGAGGAAGTTCGAGAGGAAGCAAGAGCTGCAGAGAGGGTTAAGCAAGAAGAATATATAAAGAAATTGGAGAGGGAATGGGCTGAGGCCAAGCAAGAGTTAAATGAAGAGCGGGAAAATGTGCGGAGATTCACATCAGATCGGGACCAAACACTAAAAAATTCTTTGAGACAGGTTGAGGATATGAGCAAAGAGTTAGCTAATGCATTGCGTGCAGTTGCATCTGCTGAATCAAGGGCTGCTGTTGCTGAGGCAAAACTCTCTGGTCTTCAAAGAAAGATGGGTTCCACAGATGACAAGCTTGTTGAAATAGGTGGAGTGAGTGGATCTTCCACTTTGTCAAGTGATGAGGTTGTTGCTGAATTGCAAAAGGCAAAAGACGAGATTGAAAAGTGGAAAGAGGAAGCGCATGCCAACAAAGCTCACATGCTGCAGTATAAGAGCATTGCTGAGGTGAATGAAGATGCATTGAAAGAGATAGAAAAGGCGCATGAGAAGTTTAAAACAGAGGCTGACAATGGAAAGAAAGTTTTGGAATCTGAACTTAACTCACTTAGAGAGAAGATGTTAGAGATTGAAAATGAATCTTCTTTGAAATATGAAGAAGTTGCTTCTGAAACTGTTGGAAAGGAAGAGGCTCTTACATCTGCTATGGCTGAAATCACAAATCTTAAAGAAGAAATTTTAACCAAATCTTCTCAAATTTCAGCAATGGAAATTCAGATCTCAGGTTTAAAAGAAAACCTGGACAGGGAGCATCAGAAATGGCGGGCAACTCAAACCAATTATGAAAGACAGGTTGTTCTCCAGTCCGAAACTATTCAGGAGTTGACAAAAACATCTGAAGCACTAGCCTTGCTGCAGGAGGAGGCATCTGAATTACGGAAACTAGCCAATACTCAGAAAATTGAAAATAATGAACTAAAGACTAAGTGGGAAGATGAGAAGGCACAACTAGAAAAGTCTAGGAATGATGCTGAGAAGAAATACAATGAAATCAATGAACAGAATAAAATACTACATAGCCAACTTGAGGCTTTTCATATTCAATGGGCCGAGAAGGAGCGTAATGCTGCTGGTATTTCATCTGGAAGTAGTAGTGCAGATGCCTTTGGTGATGCTGGTCTTCAAAACGTGATTAATTATCTCAGACGTTCCAAAGAAATTGCAGAAACAGAAGTTTCGTTGTTAAAACAAGAGAAGCTGCGATTACAGTCACAGCTTGAGACTGCTTTGAAGGCAGCAGAGTCTGCACATGCATCACTAGAAACTGAGCGTGCAAAATCAAGATCATTTTTGTTTACCGAAGAAGAGTTCAAAGCATTGCAGCTTCAGGTCAGAGAAATGAACTTACTTCGTGAGAGTAACATGCAGCTCAGGGAAGAAAATAAACACAATTTTGAGGAATGTCAGAAATTGCGTGAACTGGCACAAAAGGTTAGAGCTGAGACAGAGAACCTAGAGAATCTCCTGAAGGAAAGAGAAATTAAGCTTGATGGCCATACGAAAGAAATTGAAACCCTAAAAATGGAAAAAGATCATCTCAATAAGAAGGTTACTGAGCTGCTTGAAAGGAGTAAAAATGTTGATGTTGAGGATTATGATCGAGTGAAGAAACTTGCTAAAGAGATCCAGGATAAACTAAGAGAGAGGGATGCTCGGATTGAGGAAATTGGTAAAAGTCTATCAGAAAAGCAGGATTCTGTTTCATCCCTAGAGAAAGATCTTTCAAACTGCCGATTGGAGCTTGCAGAGAGAGAGAAGAGAATTAATGACATTCTGCATAATGAGGCTAACCTAAAACTTGATTCAGAGAAGCATAGGAAACTGCTGGCTCAGTTTAAGAAGAGGATTGATGTTTTGTCAAGGGAAAAAGAAGACCTAGGAAAAGAGAACCAGCAACTTTCTAGGCAATTAGATGAAATTAAACAAGGGAAAAGGTCAACAAGTGATACAACTGGTGAACAAGCGATGAAGGAGGAAAAGGACACAAGAATACAGATTCTGGAGAAACATCTGGAGAGACTGAGAGATGAATTAAAGAAGGAGAAGGAAGAGAGTCGTTTAGAGAAAAGTAGACGACTGAAGACTGAAAAGGCCATAAAGGACTCTTACAACAATGTTGAACAGGAGAAAATAAAATCGATTAATGAAATTGAGAGGTACAAGGAGTCTCTGAAAAGGTTATCTGATGAAGTTGAAAAGCTTAAGATTGTTATTGGAAATCTTCCTGAGGGTTCAAATGTGGTTCAACTTCTTTCTGGATCCAATGTTGATGACTTTGCTGCTCCTTACATATCTGCTGTGGAAAGTTTTGAAAAGGAAGCTCAGTCAGTATTTCGTGAGCTTGGAGGTCGCGGTAATCTTGGAGATGCAGCAACAGTTACGGATGGTTCAGCAGCTGCTACAGGTTCTCTTGTCCATCCTCAACCCCAAGGCATTACATTTTCAGCGGCCCCTGGAGCTAGTGGTTTACCACCTAAAGCCAGTGGAGAAAGTGAGAAAAGACTTGCATTACCCAAAGCTAGTGTTGAAACTCGTCGAGCAGGTAGGAGATTGGTCAGGCCTAAACTACTAAGACCTGAGGAGCTACAAGGTGGTGACACGGAAATGTCTGATGCCGAAGGACCAGGGGGCAAGCCTGGGCCATCTAGTGACACTGAAACTAGTAGTGTTGTTCAATCATCTCAACAATTGGCTCGTAAGCGTGTTGCTCCTACCTCCACTTCTGAATTACGTGAAGAATCAGTTGCACCTGGTGAGAAGAGCTCCGATGTCTTGAAGAAGTCTAAAGGATCTGAGTCCCCAGAAGAGAATACAGAAGAACAACCTGCTGCGACTCTGGAATTTACTGGCAGTCACCCTGTCACTGAAGAATTATTGGATAGTAGTGACATGCCCCAAGGCCAAAATGAGGAGGTTGGTGACGCTCAAAATGAAGATGGTGAAATTGCTGTTGGGAATGATGAGGAATCCAAAGATCCACAGAACTTGGATGTTACTGGTCAAGAGGAATTACAAGGTGACAAAACTGGAACTTTAGAAGAGAATCCGGATCAACCTGTTGATGCAAAAATGCTGTCTGATGAGATGCAGAGGGATCAGACAGACCCAGACAACCAGCAGTCAACATTGGCGCCCAGTGGTGAGAGAGAAGAGGGAGAATTGTTGCCAGATATCGGTGATCTAGAGGGTGCTAGTGATTTGTCTAACATTGCCGAAAACCAAGAATCTCGGGAAGGTCTATCTGAGTCTGCTGCAACCCCTGAACGTTCTCCGGCTACGGTTGATGATGATGCTCTAGAGGCCGGTGAGATTAATTCTCCTGAGCTTTCAAGTGATGATAAGAATGATGAGGGTGACTCGGTAGAGGATGCTGCTGATGCTTCCGACAAGTTGATGGACGTCAATGAACAAATATCAGCCGAGAGCGATCAGGTGGCCGAGCCTACACCTGTGGCAAGTGAGGGTGCTACTTTGACAAGCAGTGTTGTAGAGAGTAGCTCCTCTAAAGTGAACTTACCTGTTCCAAGGCAAGGGACCCCCAATGCCCCTGCTGAAACAGAAGAGACAAAGCAGGCATCACCTATTGGTAGTACTTCAACGACTATAATTTTATCAGAGCGAGCACGGGAAAGGGCCCAAATGAGACAGGCTGGGTTGGTTTCTTCTACCCTTAGAGGTCGTGGAAGAGGCGGTGCTCCCCGTGGTCGAGTTGGTCGAGGTAGGGGAGTAGTACGCCGACCACCTCCACCACCTGGCAGTGATCAATGA
>Glyma15g41950.1 sequence type=predicted peptide gene model=Glyma15g41950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPLFLSDEEFARCSGDGAAVAAKADAFIRGLLHELDTVRAKADAADINAEQNCSLIEQKYLSLTAEFSKLESNVAELQSSLDQRLREIAEVQSQNHRIQLQLVEKDREIERLRTEVAELHKSKRQLLELNEQKDLELSEKNATMKSYLDKIVRLSENAAHKEARLSEVEAEMARCRAACTRFEQEKEIVERQNSWLNEELNAKVNIVFELRRKHTEYEADMTSKLADMQRQFGESSKSLQWNKDRVRELEMKLKSVQEELISAKDVAAANEEQLSAELSTVNKLNELYKESSEEWSKKAADLEGVIKAMESHQKQVEDDYKEKLEKELSARKQVEKEATDLKERLEKCEAEIETRKKTDGVNNLPLSSFATESWMESIEADSMVEENSLLVPRIPVGVSGTALAASLLRDGWSLAKMYAKYQEVVDALRHEQLGRKESEAVLQRVLYELEQKAEAILDERVEHDKMADAYSLMNQKLQNSLNENSNLEKTIQELKADLKRRERDYNLVLKETDDLQKQVTVLLKECRDIQLRCGSMGYDIVDDASNIASRTSRETEAEDVISEHLLTFKDINGLVEQNVQLRSLVRSISGHIENQEVEFKEKLEMELKKHTEESASKVAAVLQRAEEQGHMIEALHASVAMYKRLYEEEHNLHLSHTHSSEALAAVAAVGRNNIKTSIESSQEAAKKSLEKAAERVRCLEDDLAKSRSEIIVLRSERDKSALEANFAREKLNDIMKEFEHQKTEAKGILERNIEFSQLVVDYQRKLRESTESLIAAEELSRKLSMELSVLKQEKEVISNAEKRASDEVHSLSARVQRLQASLSTIQSTEEVREEARAAERVKQEEYIKKLEREWAEAKQELNEERENVRRFTSDRDQTLKNSLRQVEDMSKELANALRAVASAESRAAVAEAKLSGLQRKMGSTDDKLVEIGGVSGSSTLSSDEVVAELQKAKDEIEKWKEEAHANKAHMLQYKSIAEVNEDALKEIEKAHEKFKTEADNGKKVLESELNSLREKMLEIENESSLKYEEVASETVGKEEALTSAMAEITNLKEEILTKSSQISAMEIQISGLKENLDREHQKWRATQTNYERQVVLQSETIQELTKTSEALALLQEEASELRKLANTQKIENNELKTKWEDEKAQLEKSRNDAEKKYNEINEQNKILHSQLEAFHIQWAEKERNAAGISSGSSSADAFGDAGLQNVINYLRRSKEIAETEVSLLKQEKLRLQSQLETALKAAESAHASLETERAKSRSFLFTEEEFKALQLQVREMNLLRESNMQLREENKHNFEECQKLRELAQKVRAETENLENLLKEREIKLDGHTKEIETLKMEKDHLNKKVTELLERSKNVDVEDYDRVKKLAKEIQDKLRERDARIEEIGKSLSEKQDSVSSLEKDLSNCRLELAEREKRINDILHNEANLKLDSEKHRKLLAQFKKRIDVLSREKEDLGKENQQLSRQLDEIKQGKRSTSDTTGEQAMKEEKDTRIQILEKHLERLRDELKKEKEESRLEKSRRLKTEKAIKDSYNNVEQEKIKSINEIERYKESLKRLSDEVEKLKIVIGNLPEGSNVVQLLSGSNVDDFAAPYISAVESFEKEAQSVFRELGGRGNLGDAATVTDGSAAATGSLVHPQPQGITFSAAPGASGLPPKASGESEKRLALPKASVETRRAGRRLVRPKLLRPEELQGGDTEMSDAEGPGGKPGPSSDTETSSVVQSSQQLARKRVAPTSTSELREESVAPGEKSSDVLKKSKGSESPEENTEEQPAATLEFTGSHPVTEELLDSSDMPQGQNEEVGDAQNEDGEIAVGNDEESKDPQNLDVTGQEELQGDKTGTLEENPDQPVDAKMLSDEMQRDQTDPDNQQSTLAPSGEREEGELLPDIGDLEGASDLSNIAENQESREGLSESAATPERSPATVDDDALEAGEINSPELSSDDKNDEGDSVEDAADASDKLMDVNEQISAESDQVAEPTPVASEGATLTSSVVESSSSKVNLPVPRQGTPNAPAETEETKQASPIGSTSTTIILSERARERAQMRQAGLVSSTLRGRGRGGAPRGRVGRGRGVVRRPPPPPGSDQ*
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