SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G64670 | AT | Annotation by Michelle Graham. TAIR10: Ribosomal protein L18e/L15 superfamily protein | chr5:25852535-25853880 REVERSE LENGTH=281 | SoyBase | E_val: 5.00E-137 | ISS |
| GO:0006354 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA-dependent transcription, elongation | SoyBase | N/A | ISS |
| GO:0006412 | GO-bp | Annotation by Michelle Graham. GO Biological Process: translation | SoyBase | N/A | ISS |
| GO:0009220 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide biosynthetic process | SoyBase | N/A | ISS |
| GO:0042254 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ribosome biogenesis | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005840 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: ribosome | SoyBase | N/A | ISS |
| GO:0015934 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: large ribosomal subunit | SoyBase | N/A | ISS |
| GO:0003735 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome | SoyBase | N/A | ISS |
| KOG0846 | KOG | Mitochondrial/chloroplast ribosomal protein L15/L10 | JGI | ISS | |
| PTHR12934 | Panther | 50S RIBOSOMAL PROTEIN L15 | JGI | ISS | |
| PTHR12934:SF1 | Panther | gb def: y92h12br.8.p [caenorhabditis elegans] | JGI | ISS | |
| PF00828 | PFAM | Ribosomal protein L18e/L15 | JGI | ISS | |
| UniRef100_D7MRW5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ribosomal protein L15 family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7MRW5_ARALL | SoyBase | E_val: 8.00E-135 | ISS |
| UniRef100_I1MJF2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MJF2_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma15g41870 not represented in the dataset |
Glyma15g41870 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma08g17290 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g264500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g41870.2 sequence type=transcript gene model=Glyma15g41870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GAACTGACCCTTTCCCCGTCTTGCCTTTTGGTTTGAAGCTGTTATCATTGGAAATTAGCACTTCTTTGTTAGTGAAAGATTAGAGCAGGATAAAAATGCTCAGACGAAGGCTATCTGTTCTCTCAACGTCAATCATCAGAAGGTCAAATCATAGCAAACCCATTCTCAGATACCCATCTATCCAATCTCACCCCTTTCAGCTCCGTCACTCTCCCAGTGCTTACCGAATAATTAGTCCAAATGCATTCCCGGATTTTCAAGGTTTTAGAGCTTACAGTCTTCTGAGCTTGAATGATCTGAGAGATAAGGTTCCCAGAAAACAGCCGACGAGGAAGGGGCGTGGGATTGGGTCTGGAAAGGGCAAGACTGCAGGGAGGGGTCACAAGGGTCAGAGAGCCAGAAAAGGTATAAAATTGGGGTTTGAAGGAGGCCAGACCCCTCTTCGCCGAAGACTACCCAAACGTGGGTTCAAGAACCCATTTAGCCTCACTTTTCAGCCAATAGGTTTGGGGAAAATTGCAAAGTTTATTAATGCTGGGAAGATAGATTCTTCTGAACTGATTACAATGAAAACACTAAAGGATGCAGGGGTACTAGGGAAGCAAATGAAAGATGGAGTAAGATTGATGGGGCGTGGTTCTGAGCAGATCAAGTGGCCAATTCATCTAGAGGTATCGAGGGTTACTGTTAGGGCTAAGGAAGCAGTTGAAGCAGCTGGTGGGTCTGTGAGAAGGGTGTATTACAATAAGTTGGGCTTGAAGGCACTGGTGAAGCCTGAGTGGTTTGAAAAGAAAGGAAGATTATTGCCTCGAGCAGCTAGACCTCCTCCTAAGCAAAAGGACAAAGTTGATAGCATTGGTCGGTTGCCCGCCCCAACGAAGCCAATTCCATTTTTAGTTGAAGCAAGCAAAGATCTTCCAGTTCAGCATCTTAGTTAAATAGCTAACATTTTTGGCACCAGTTTTTAGGATTTTGTAATTCTGTGTGGTGCAAACGTCTGACTCAAAAGTTTTTCATGCAGTTCTTGCAAATGCTCAGGTAGTTAATTCAAGAATGAGATAAATGAATTTCCTTGGGGACAAATGAAAGGGAAAAATCTTGTTTATTATTTCATTTCTTTTAAGGATTTGATCTTGGTCACTCAGTTGAAAAGAGCCATAGTTTCTTGTGTATGTGTGCTTGGTGTAGGATCATAGCCTCTTCATTAAGGGAAAATTGTAAGAACACTCTTCAATTTTTAACTTTTCTCCGGATATGGATGGTACTTGTCAAATGACTTGGCTGAATTTTAATAAATGGACGATTGTTTCAATCCGAATTTGTATT
>Glyma15g41870.1 sequence type=CDS gene model=Glyma15g41870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTCAGACGAAGGCTATCTGTTCTCTCAACGTCAATCATCAGAAGGTCAAATCATAGCAAACCCATTCTCAGATACCCATCTATCCAATCTCACCCCTTTCAGCTCCGTCACTCTCCCAGTGCTTACCGAATAATTAGTCCAAATGCATTCCCGGATTTTCAAGGTTTTAGAGCTTACAGTCTTCTGAGCTTGAATGATCTGAGAGATAAGGTTCCCAGAAAACAGCCGACGAGGAAGGGGCGTGGGATTGGGTCTGGAAAGGGCAAGACTGCAGGGAGGGGTCACAAGGGTCAGAGAGCCAGAAAAGGTATAAAATTGGGGTTTGAAGGAGGCCAGACCCCTCTTCGCCGAAGACTACCCAAACGTGGGTTCAAGAACCCATTTAGCCTCACTTTTCAGCCAATAGGTTTGGGGAAAATTGCAAAGTTTATTAATGCTGGGAAGATAGATTCTTCTGAACTGATTACAATGAAAACACTAAAGGATGCAGGGGTACTAGGGAAGCAAATGAAAGATGGAGTAAGATTGATGGGGCGTGGTTCTGAGCAGATCAAGTGGCCAATTCATCTAGAGGTATCGAGGGTTACTGTTAGGGCTAAGGAAGCAGTTGAAGCAGCTGGTGGGTCTGTGAGAAGGGTGTATTACAATAAGTTGGGCTTGAAGGCACTGGTGAAGCCTGAGTGGTTTGAAAAGAAAGGAAGATTATTGCCTCGAGCAGCTAGACCTCCTCCTAAGCAAAAGGACAAAGTTGATAGCATTGGTCGGTTGCCCGCCCCAACGAAGCCAATTCCATTTTTAGTTGAAGCAAGCAAAGATCTTCCAGTTCAGCATCTTAGTTAA >Glyma15g41870.2 sequence type=CDS gene model=Glyma15g41870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTCAGACGAAGGCTATCTGTTCTCTCAACGTCAATCATCAGAAGGTCAAATCATAGCAAACCCATTCTCAGATACCCATCTATCCAATCTCACCCCTTTCAGCTCCGTCACTCTCCCAGTGCTTACCGAATAATTAGTCCAAATGCATTCCCGGATTTTCAAGGTTTTAGAGCTTACAGTCTTCTGAGCTTGAATGATCTGAGAGATAAGGTTCCCAGAAAACAGCCGACGAGGAAGGGGCGTGGGATTGGGTCTGGAAAGGGCAAGACTGCAGGGAGGGGTCACAAGGGTCAGAGAGCCAGAAAAGGTATAAAATTGGGGTTTGAAGGAGGCCAGACCCCTCTTCGCCGAAGACTACCCAAACGTGGGTTCAAGAACCCATTTAGCCTCACTTTTCAGCCAATAGGTTTGGGGAAAATTGCAAAGTTTATTAATGCTGGGAAGATAGATTCTTCTGAACTGATTACAATGAAAACACTAAAGGATGCAGGGGTACTAGGGAAGCAAATGAAAGATGGAGTAAGATTGATGGGGCGTGGTTCTGAGCAGATCAAGTGGCCAATTCATCTAGAGGTATCGAGGGTTACTGTTAGGGCTAAGGAAGCAGTTGAAGCAGCTGGTGGGTCTGTGAGAAGGGTGTATTACAATAAGTTGGGCTTGAAGGCACTGGTGAAGCCTGAGTGGTTTGAAAAGAAAGGAAGATTATTGCCTCGAGCAGCTAGACCTCCTCCTAAGCAAAAGGACAAAGTTGATAGCATTGGTCGGTTGCCCGCCCCAACGAAGCCAATTCCATTTTTAGTTGAAGCAAGCAAAGATCTTCCAGTTCAGCATCTTAGTTAA
>Glyma15g41870.1 sequence type=predicted peptide gene model=Glyma15g41870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLRRRLSVLSTSIIRRSNHSKPILRYPSIQSHPFQLRHSPSAYRIISPNAFPDFQGFRAYSLLSLNDLRDKVPRKQPTRKGRGIGSGKGKTAGRGHKGQRARKGIKLGFEGGQTPLRRRLPKRGFKNPFSLTFQPIGLGKIAKFINAGKIDSSELITMKTLKDAGVLGKQMKDGVRLMGRGSEQIKWPIHLEVSRVTVRAKEAVEAAGGSVRRVYYNKLGLKALVKPEWFEKKGRLLPRAARPPPKQKDKVDSIGRLPAPTKPIPFLVEASKDLPVQHLS* >Glyma15g41870.2 sequence type=predicted peptide gene model=Glyma15g41870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLRRRLSVLSTSIIRRSNHSKPILRYPSIQSHPFQLRHSPSAYRIISPNAFPDFQGFRAYSLLSLNDLRDKVPRKQPTRKGRGIGSGKGKTAGRGHKGQRARKGIKLGFEGGQTPLRRRLPKRGFKNPFSLTFQPIGLGKIAKFINAGKIDSSELITMKTLKDAGVLGKQMKDGVRLMGRGSEQIKWPIHLEVSRVTVRAKEAVEAAGGSVRRVYYNKLGLKALVKPEWFEKKGRLLPRAARPPPKQKDKVDSIGRLPAPTKPIPFLVEASKDLPVQHLS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
