Glyma15g41670 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma15g41670

Feature Type:	gene_model
Chromosome:	Gm15
Start:	48846515
stop:	48852377
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g41670

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G79460	AT	Annotation by Michelle Graham. TAIR10: Terpenoid cyclases/Protein prenyltransferases superfamily protein \| chr1:29890568-29894436 FORWARD LENGTH=785	SoyBase	E_val: 3.00E-108	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009686	GO-bp	Annotation by Michelle Graham. GO Biological Process: gibberellin biosynthetic process	SoyBase	N/A	ISS
GO:0009740	GO-bp	Annotation by Michelle Graham. GO Biological Process: gibberellic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0042546	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall biogenesis	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009536	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0000287	GO-mf	Annotation by Michelle Graham. GO Molecular Function: magnesium ion binding	SoyBase	N/A	ISS
GO:0009899	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ent-kaurene synthase activity	SoyBase	N/A	ISS
GO:0010333	GO-mf	Annotation by Michelle Graham. GO Molecular Function: terpene synthase activity	SoyBase	N/A	ISS
GO:0016829	GO-mf	Annotation by Michelle Graham. GO Molecular Function: lyase activity	SoyBase	N/A	ISS
PF01397	PFAM	Terpene synthase, N-terminal domain	JGI		ISS
PF03936	PFAM	Terpene synthase family, metal binding domain	JGI		ISS
UniRef100_G7IV06	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ent-kaur-16-ene synthase n=1 Tax=Medicago truncatula RepID=G7IV06_MEDTR	SoyBase	E_val: 7.00E-177	ISS
UniRef100_I1MJD9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1MJD9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g41670

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g41670

Paralog	Evidence	Comments
Glyma08g17470	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g41670 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g263300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g41670

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g41670

Limit To All Plant Sequences

>Glyma15g41670.1   sequence type=CDS   gene model=Glyma15g41670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTGATATACTTTTTCCTTCTTTGATTGAATATGCACAAAATTTTGGCATTAACCTTCCAATTGGAGCTACAAGCTTGGAAGTAATGATCCAGAAGAGAGAAATAGAGCTCCAAAGTCTTGAAAGGTTGGGTGTTAATCATCATTTCAAAGAGGAAATTCGAAGTGTATTGGATGAAATATTCAGATATTGGATACAAGGAGTGGAGAATATATTCCTAGACCCCACCACCTGTGCAATGGCATTTCGTATGCTGCGTCTCAATGGCTATGATGTATCTTCAGGTTGGATCATCAAGGCCAAAGAAGTTAATCTGTATGTTGTCTTTGCAGATCCATTTTATCAATATTCTGAAGATAAATTTGCTGAATCCTTGAAAGGGTACTTGAAGGATGTCAGTGCTGTTATAGAACTATATAGGGCTTCACAAGCCATTATACATCCCGATGAATCAATTTTGGTCAGACAAAGTTTGTGGACAAAACATCTTCTGAAGCAGGAATCCTCCCCTTACAGATTATATGCTGATAAACTTCGTCGTTATGTTGATCTAGAGGTCAAGGATGTTCTTAATTTTCCTTATCATGCAAATTTGGAGCGATTGTTGAACAGGAGATCAATGGAGCATTACAATGCAGTAGAAACAAGAATTTTAAGAACATCGTATAGATCTTGCAATCTTGCAAACCAAAAAATTCTAAAGCTAGCAGTAGAAGATTTCAATATCTGCCAATCAATACACATTGAAGAGTTGAAACAACTTTCAAGGGGTGAAAATGGGGTGCTCACAACTGTTGATGATTTCTTTGATGTTGGGGGTTCTGAAGAGGAACAAGTGGATCTTATTCAACTAGTTGAGAAGTGGGATGTAGATATCAATACTGTTTGTTGTTCTGAGACTGTTAAGATAATATTTTCTTCAATTCACAGCACAGTTTGTGAGATTGGGGAGAAATCAGTCAATTGGCAAGGGCACAATGTGAAAAACAATGTTATCAAAATTTGGTTGAATTTGATCCAATCAATATATAGAGAAGCTGAGTGGTTGAGAACCAAGACTGTGCCAACAATTGATGATTATATGCAAAATGCATACATATCATTTGCCTTAGGTCCAATTGTCCTTCCAGCCCTCTATCTCGTCGGACCTAAGCTTTCAGATGAAGATGCTGAAAATCATGAGTTGAACTCTCTATATAAGCTCAGAGAATCTGAGGAAGGGAAATTGAACGTGCTGCCTTTGCACATTGCTCATGGCAATGGAATTATTACTGAAGAAGATGCTATGGAAGAGATGACAGTGCATTCTCAGCAGAACCTTAGTCTTGTCAAAGCCACTAATGATGTGATGCTCTAG

Predicted protein sequences of Glyma15g41670

Limit To All Plant Sequences

>Glyma15g41670.1   sequence type=predicted peptide   gene model=Glyma15g41670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
FDILFPSLIEYAQNFGINLPIGATSLEVMIQKREIELQSLERLGVNHHFKEEIRSVLDEIFRYWIQGVENIFLDPTTCAMAFRMLRLNGYDVSSGWIIKAKEVNLYVVFADPFYQYSEDKFAESLKGYLKDVSAVIELYRASQAIIHPDESILVRQSLWTKHLLKQESSPYRLYADKLRRYVDLEVKDVLNFPYHANLERLLNRRSMEHYNAVETRILRTSYRSCNLANQKILKLAVEDFNICQSIHIEELKQLSRGENGVLTTVDDFFDVGGSEEEQVDLIQLVEKWDVDINTVCCSETVKIIFSSIHSTVCEIGEKSVNWQGHNVKNNVIKIWLNLIQSIYREAEWLRTKTVPTIDDYMQNAYISFALGPIVLPALYLVGPKLSDEDAENHELNSLYKLRESEEGKLNVLPLHIAHGNGIITEEDAMEEMTVHSQQNLSLVKATNDVML*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain