Report for Sequence Feature Glyma15g41630
Feature Type: gene_model
Chromosome: Gm15
Start: 48788644
stop: 48791037
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma15g41630
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G79480 AT
Annotation by Michelle Graham. TAIR10: Carbohydrate-binding X8 domain superfamily protein | chr1:29897905-29899267 REVERSE LENGTH=397
SoyBase E_val: 1.00E-51 ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
PTHR16631 Panther
GLUCAN 1,3-BETA-GLUCOSIDASE-RELATED
JGI ISS
PTHR16631:SF1 Panther
GLUCAN 1,3-BETA-GLUCOSIDASE
JGI ISS
PF07983 PFAM
X8 domain
JGI ISS
UniRef100_G7IB18 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Glucan endo-1,3-beta-glucosidase n=1 Tax=Medicago truncatula RepID=G7IB18_MEDTR
SoyBase E_val: 2.00E-104 ISS
UniRef100_I1MJD6 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MJD6_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma15g41630
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma15g41630
Paralog Evidence Comments
Glyma08g17511 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma15g41630 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.15g263000 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma15g41630
Coding sequences of Glyma15g41630
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma15g41630.2 sequence type=CDS gene model=Glyma15g41630 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGTCATGGAAACAAGTAGAGTGAAAAAGAATGTCGGGATACTTCTCCTCTACCTCACTTTGGCTGCTATTTCTCTCACTCATTGTGATGCAGATAAATCAATGAGACTATTGAGAGGCCCTAAACATAGAAGAAATACAACCAACAAGAACCCAAAGAAGTTGAAAACGGTTAAGCATTTTGATGAGAACCCAACCATATTATCATCAAATGTACAACCCTATAGTCTCAGCTCCCCATTTTCTTTGCCCCCTTATGAATCACTTGCTCCAATCCCATTGCCAGAAAACAGCCCTCCATTTTGTGTGTTTCCACCACCAGGTACTCCTTCCACCACCATTCCCACACCTACAGGCTTTCAACCAACCACACCATCACCTCCATACTATGACACCTCACCAGTCTTTCCAGGCCCTCCAAGCCCACCAGTGTCCTTTCCCACACCAACCCCAGAAACTGTTCCAGGCCCACCCAGCATCACGCCGGGCTCGCCCGAACCCGTGCTCAACCCTCCCATCATTATTCCAAGCCCACCTGACTCCTCCATGGGCCCACCCAGGATCACACCAGGATCGCCGGAGCCCATACTCAATCCTCCCATCATTATTCCAAGCCCACCTGACTCCTCAATGGGCCCACCCTACTTTGAGCCCACCCCACCACTCATAATCCCTTCCCCCACAGGTGGCATCACCCCAGGCCCACCATCCCCCACTGAAGGCACTGTGCCAAGCCCAAGCGTGTTTCAGCCACCTGTGGTGTACCCTCCACCAAGTGTGCCACCACCACCCAACTATGCCCCTAGGACCACCTTGTGGTGTGTGGCTAAGCCCTCAGTCCCAGACCCAATCATCCAAGAGGCCATGAACTATGCTTGTTGGTCAGGAGCGGATTGCACCTCAATTCAGCCCAATGGGCCATGCTATGAGCCCAACACTGTGTATGCACATGCATCATACGCTTTCAATAGCTATTGGCAAAGGACTAAAGGGGCTGGTGGCAATTGTGAATTTGGAGGCACAGCCATGCTGGTTGCAGTTGATCCTAGCTTTGATGGGTGCTACTTCATCTACAACTGA
Predicted protein sequences of Glyma15g41630
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma15g41630.2 sequence type=predicted peptide gene model=Glyma15g41630 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MVMETSRVKKNVGILLLYLTLAAISLTHCDADKSMRLLRGPKHRRNTTNKNPKKLKTVKHFDENPTILSSNVQPYSLSSPFSLPPYESLAPIPLPENSPPFCVFPPPGTPSTTIPTPTGFQPTTPSPPYYDTSPVFPGPPSPPVSFPTPTPETVPGPPSITPGSPEPVLNPPIIIPSPPDSSMGPPRITPGSPEPILNPPIIIPSPPDSSMGPPYFEPTPPLIIPSPTGGITPGPPSPTEGTVPSPSVFQPPVVYPPPSVPPPPNYAPRTTLWCVAKPSVPDPIIQEAMNYACWSGADCTSIQPNGPCYEPNTVYAHASYAFNSYWQRTKGAGGNCEFGGTAMLVAVDPSFDGCYFIYN*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
