Glyma15g41620 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma15g41620

Feature Type:	gene_model
Chromosome:	Gm15
Start:	48764441
stop:	48767309
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g41620

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G12750	AT	Annotation by Michelle Graham. TAIR10: zinc transporter 1 precursor \| chr3:4051950-4053156 REVERSE LENGTH=355	SoyBase	E_val: 4.00E-150	ISS
GO:0006826	GO-bp	Annotation by Michelle Graham. GO Biological Process: iron ion transport	SoyBase	N/A	ISS
GO:0006829	GO-bp	Annotation by Michelle Graham. GO Biological Process: zinc ion transport	SoyBase	N/A	ISS
GO:0006833	GO-bp	Annotation by Michelle Graham. GO Biological Process: water transport	SoyBase	N/A	ISS
GO:0010043	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to zinc ion	SoyBase	N/A	ISS
GO:0010106	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to iron ion starvation	SoyBase	N/A	ISS
GO:0030001	GO-bp	Annotation by Michelle Graham. GO Biological Process: metal ion transport	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0071577	GO-bp	Annotation by Michelle Graham. GO Biological Process: zinc ion transmembrane transport	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0005385	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion transmembrane transporter activity	SoyBase	N/A	ISS
GO:0046873	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metal ion transmembrane transporter activity	SoyBase	N/A	ISS
KOG1558	KOG	Fe2+/Zn2+ regulated transporter	JGI		ISS
PTHR11040	Panther	ZINC-IRON TRANSPORTER	JGI		ISS
PTHR11040:SF1	Panther	ZINC/IRON TRANSPORTER	JGI		ISS
PF02535	PFAM	ZIP Zinc transporter	JGI		ISS
UniRef100_I1MJD5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MJD5_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q6VM20	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Metal transport protein n=1 Tax=Medicago truncatula RepID=Q6VM20_MEDTR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g41620

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g41620

Paralog	Evidence	Comments
Glyma08g17530	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g41620 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g262800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g41620

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g41620

Limit To All Plant Sequences

>Glyma15g41620.1   sequence type=CDS   gene model=Glyma15g41620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGAACTTTCAAGCATGTTCAAACACCATCTCAAACTTGTTCTATGTTTGTTTTGTCCTTTTACCAACCATGGCCTTAGGAGATTGCACTTGTGACACAATAGAGGCCACAAAGAGTGACTCAATTGAAGTCCTCCACTACAAAATTGGCTCAATTGCTTCTGTGCTTGTTGCTGGGGCTCTTGGGGTGAGCCTCCCATTGTTGAGCAAGAGAATCCCAACACTTAACCCCAAGAATGACATATTCTTCATGGTTAAGGCCTTTGCTGCAGGGGTGATTCTTGCAACTGGGTTTGTGCACATACTTCCAGAGGCATATGAGAGCCTAACTTCACCTTGCCTTAAGGAAAATCCATGGGGAAAGTTTCCCTTCACTGGATTTGTTGCCATGTTGTCCTCCATAGGGACCTTAATGGTGGACTCATTTGCCACAGGGTTTTATCATAGGCAACATTTTAACCCCTCTAAGCAGGTTCCTGCTGATGATGAGGAAATGGGAGATGAACATGCTGGTCACATACATGTTCATACACATGCCACACATGGTCATGCTCATGGATCAGCTGTGTCCTCTGAGGGTTCAATTACATCTGATGTAATAAGGCAGCGCATCATATCACAAGTGTTGGAGATAGGAATAGTGATCCATTCAGTGATCATTGGAATATCATTGGGTACTGCAGGCAGCATTGATACCATAAAGCCTCTCCTCGTGGCCCTGTCTTTCCATCAATTTTTTGAGGGTATGGGGCTTGGTGGTTGCATATCTCAGGCAAAGTTTGAGTCCAAGTCTATGGCAATTATGGCAACCTTTTTCTCACTGACAACCCCAATTGGGATAGCAATTGGAATGGGGGTGTCAAGTGTGTACAAAGAGAATAGCCCTACTGCTTTAACTGTTGAAGGGATTTTCAATTCTGCTTCTGCTGGAATTTTGATTTACATGGCATTGGTGGATTTGCTAGCAGCTGATTTTATGAGCCCAAGGTTGCAGAAAAATTTGAAGCTCCAACTAGGGGCAAATATTTCCCTTCTCTTAGGAGCAGGTTGCATGTCTCTATTGGCCAAATGGGCTTAA

Predicted protein sequences of Glyma15g41620

Limit To All Plant Sequences

>Glyma15g41620.1   sequence type=predicted peptide   gene model=Glyma15g41620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMNFQACSNTISNLFYVCFVLLPTMALGDCTCDTIEATKSDSIEVLHYKIGSIASVLVAGALGVSLPLLSKRIPTLNPKNDIFFMVKAFAAGVILATGFVHILPEAYESLTSPCLKENPWGKFPFTGFVAMLSSIGTLMVDSFATGFYHRQHFNPSKQVPADDEEMGDEHAGHIHVHTHATHGHAHGSAVSSEGSITSDVIRQRIISQVLEIGIVIHSVIIGISLGTAGSIDTIKPLLVALSFHQFFEGMGLGGCISQAKFESKSMAIMATFFSLTTPIGIAIGMGVSSVYKENSPTALTVEGIFNSASAGILIYMALVDLLAADFMSPRLQKNLKLQLGANISLLLGAGCMSLLAKWA*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain