Report for Sequence Feature Glyma15g41610
Feature Type: gene_model
Chromosome: Gm15
Start: 48738891
stop: 48741310
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma15g41610
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G79510 AT
Annotation by Michelle Graham. TAIR10: Uncharacterized conserved protein (DUF2358) | chr1:29908271-29909175 REVERSE LENGTH=275
SoyBase E_val: 2.00E-124 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
KOG4457
KOG
Uncharacterized conserved protein
JGI ISS
PF10184 PFAM
Uncharacterized conserved protein (DUF2358)
JGI ISS
UniRef100_I1MJD4 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MJD4_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q7XLD2 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: OSJNBa0070C17.17 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q7XLD2_ORYSJ
SoyBase E_val: 3.00E-77 ISS
Expression Patterns of Glyma15g41610
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma15g41610
Paralog Evidence Comments
Glyma08g17540 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma15g41610 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.15g262600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma15g41610
Coding sequences of Glyma15g41610
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma15g41610.1 sequence type=CDS gene model=Glyma15g41610 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTTTTCTTCTCCCCAACCTCCAACCTTCACTTTTAGCTCAATCCAAATCCAACAAAGACAAAGCAAACCTTCACCAAACTCTCTCACCTCAAAAACCCACTTCTCAGTTTCCTATATCTTCCACCACATGCTCCTCTTCTTCTCTCCAAACTGCACAAGCTGCACAGGTCAGCACACCACAAGACAAGCAGCAGCAACAGCCAAAGGATGAATTCTACCTCAACCTTGGCCTTGCTGTCAGGACCATCCGTGAGGACCTTCCTTTGGTCTTCGTCAAAGACCTCAATTATGACATTTATAGGGATGACATAACATTCATGGATCCCTTGAACACATTTACTGGGATTGAGAAGTACAAATTGGTCTTCTGGGCGTTGAGGTTTCATGGCAAAATCTTGTTCCGTGAGATAGCACTTGATGTGTACAGGGTGTGGCAGCCATCAGAGAATGTGATATTGGTCAGGTGGAACCTTAGGGGTGTGCCACGGGTTCCTTGGGAGGCCAAAGGAGAGTTTCAGGGCACCTCAAGGTACAAATTGGACAGAAATGGAAAAATTTATGAACACAAAGTTGATAATTTGGCATTCAATTTCCCTCAGAATATTAAACCAGTTTCAGTTTTGGATTTGGTTACTGCATGCCCTGCAAGTCCAAATCCTACCTTTTTGTGGGGTCCTGTTGATGCATACTCTTCTTCATGGATAGCCTTTTACAAGGCAGTTAGGGACACATTGGATCAAGAAAGGAGTTTGCTACCACAAGATGGTCTAGCTACATGTTCATAG
Predicted protein sequences of Glyma15g41610
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma15g41610.1 sequence type=predicted peptide gene model=Glyma15g41610 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAFLLPNLQPSLLAQSKSNKDKANLHQTLSPQKPTSQFPISSTTCSSSSLQTAQAAQVSTPQDKQQQQPKDEFYLNLGLAVRTIREDLPLVFVKDLNYDIYRDDITFMDPLNTFTGIEKYKLVFWALRFHGKILFREIALDVYRVWQPSENVILVRWNLRGVPRVPWEAKGEFQGTSRYKLDRNGKIYEHKVDNLAFNFPQNIKPVSVLDLVTACPASPNPTFLWGPVDAYSSSWIAFYKAVRDTLDQERSLLPQDGLATCS*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
