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Report for Sequence Feature Glyma15g41610

Feature Type:gene_model
Chromosome:Gm15
Start:48738891
stop:48741310
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G79510AT Annotation by Michelle Graham. TAIR10: Uncharacterized conserved protein (DUF2358) | chr1:29908271-29909175 REVERSE LENGTH=275 SoyBaseE_val: 2.00E-124ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
KOG4457 KOG Uncharacterized conserved protein JGI ISS
PF10184PFAM Uncharacterized conserved protein (DUF2358) JGI ISS
UniRef100_I1MJD4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MJD4_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q7XLD2UniRef Annotation by Michelle Graham. Most informative UniRef hit: OSJNBa0070C17.17 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q7XLD2_ORYSJ SoyBaseE_val: 3.00E-77ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma08g17540 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g262600 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma15g41610.1   sequence type=CDS   gene model=Glyma15g41610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTTTCTTCTCCCCAACCTCCAACCTTCACTTTTAGCTCAATCCAAATCCAACAAAGACAAAGCAAACCTTCACCAAACTCTCTCACCTCAAAAACCCACTTCTCAGTTTCCTATATCTTCCACCACATGCTCCTCTTCTTCTCTCCAAACTGCACAAGCTGCACAGGTCAGCACACCACAAGACAAGCAGCAGCAACAGCCAAAGGATGAATTCTACCTCAACCTTGGCCTTGCTGTCAGGACCATCCGTGAGGACCTTCCTTTGGTCTTCGTCAAAGACCTCAATTATGACATTTATAGGGATGACATAACATTCATGGATCCCTTGAACACATTTACTGGGATTGAGAAGTACAAATTGGTCTTCTGGGCGTTGAGGTTTCATGGCAAAATCTTGTTCCGTGAGATAGCACTTGATGTGTACAGGGTGTGGCAGCCATCAGAGAATGTGATATTGGTCAGGTGGAACCTTAGGGGTGTGCCACGGGTTCCTTGGGAGGCCAAAGGAGAGTTTCAGGGCACCTCAAGGTACAAATTGGACAGAAATGGAAAAATTTATGAACACAAAGTTGATAATTTGGCATTCAATTTCCCTCAGAATATTAAACCAGTTTCAGTTTTGGATTTGGTTACTGCATGCCCTGCAAGTCCAAATCCTACCTTTTTGTGGGGTCCTGTTGATGCATACTCTTCTTCATGGATAGCCTTTTACAAGGCAGTTAGGGACACATTGGATCAAGAAAGGAGTTTGCTACCACAAGATGGTCTAGCTACATGTTCATAG

>Glyma15g41610.1   sequence type=predicted peptide   gene model=Glyma15g41610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAFLLPNLQPSLLAQSKSNKDKANLHQTLSPQKPTSQFPISSTTCSSSSLQTAQAAQVSTPQDKQQQQPKDEFYLNLGLAVRTIREDLPLVFVKDLNYDIYRDDITFMDPLNTFTGIEKYKLVFWALRFHGKILFREIALDVYRVWQPSENVILVRWNLRGVPRVPWEAKGEFQGTSRYKLDRNGKIYEHKVDNLAFNFPQNIKPVSVLDLVTACPASPNPTFLWGPVDAYSSSWIAFYKAVRDTLDQERSLLPQDGLATCS*







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