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Report for Sequence Feature Glyma15g41590

Feature Type:gene_model
Chromosome:Gm15
Start:48702242
stop:48706147
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g41590
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G16310AT Annotation by Michelle Graham. TAIR10: Cation efflux family protein | chr1:5578435-5580585 FORWARD LENGTH=428 SoyBaseE_val: 0ISS
GO:0006812GO-bp Annotation by Michelle Graham. GO Biological Process: cation transport SoyBaseN/AISS
GO:0009718GO-bp Annotation by Michelle Graham. GO Biological Process: anthocyanin-containing compound biosynthetic process SoyBaseN/AISS
GO:0009744GO-bp Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus SoyBaseN/AISS
GO:0010224GO-bp Annotation by Michelle Graham. GO Biological Process: response to UV-B SoyBaseN/AISS
GO:0055085GO-bp Annotation by Michelle Graham. GO Biological Process: transmembrane transport SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0016021GO-cc Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane SoyBaseN/AISS
GO:0008324GO-mf Annotation by Michelle Graham. GO Molecular Function: cation transmembrane transporter activity SoyBaseN/AISS
KOG1485 KOG Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily) JGI ISS
PTHR11562Panther CATION EFFLUX PROTEIN/ ZINC TRANSPORTER JGI ISS
PTHR11562:SF10Panther ZINC TRANSPORTER SLC30A1-RELATED JGI ISS
PF01545PFAM Cation efflux family JGI ISS
UniRef100_Q84ND5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Cation diffusion facilitator 9 n=1 Tax=Stylosanthes hamata RepID=Q84ND5_STYHA SoyBaseE_val: 0ISS
UniRef100_UPI000233C123UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233C123 related cluster n=1 Tax=unknown RepID=UPI000233C123 SoyBaseE_val: 0ISS

Expression Patterns of Glyma15g41590
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g41590 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g262400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma15g41590
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma15g41590
>Glyma15g41590.2   sequence type=CDS   gene model=Glyma15g41590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTTCGATTGTATTGGAAATTTGTTTTCTACTCCATACTACAAATACATACAGCCCTAGGATTAAAAAAAAAACAACAAAGTTATTACTTCTCTTCTTCTCTTCTCATTCTCTCAGAACACTAATATTTATCATTATTCCATCCCTCAAAAGTTGTTTTCAGGGAACGAGCATGGCGGAGAGCGACGGCAGACACCGTCGGAGGGAACCGCTTCCGGTGTCATCGGAGGAAGATGCTGCTAATGCTTCGTGGAGACTTAACGTGGAGGAGTTTCGTTTGCCAAACCAAACGCATGATCATCATCAACAGCACCGTTCCTTCACTTTCCGCGGCCTTCTCCGCAAGCCCAGGAAGCAACGCAAAGTGGCAGAATATTATAAGAAACAGGAGAGTCTCCTTGAAGGATTTAATGAGATGGAGACAATGACTGAAACGGGTGGTTTCCCAGGAACGCTTACTGAGGATGAACTGAAGCAACTAGCTAAGAGTGAGAGGATTGCTGTTCATGTATCAAATATATGTAACTTGGTGCTGTTTGTAGCAAAGGTTTATGCATCAGTTGCGAGCAGATCATTGGCAGTCATTGCTTCAACCATGGATTCTCTCTTGGATCTCTTGTCAGGCTTCATATTGTGGTTTACTGCTCATGCCATGAAAAACCCAAACCAATATCGCTATCCAATTGGAAAGAAGCGCATGCAACCTGTGGGTATCATTGTTTTTGCATCAGTGATGGCCACCTTGGGGCTGCAGATTTTGATTGAATCTGGTCGACAACTTATTTCCAAGGTCAAGCCTGACATGGATTCAGCAAAACTGCATTGGATGATGGGGATTATGGTGTTTGTGACTGTAGTGAAGTTCATTCTTATGGTCTACTGTCGAAGATTTAAAAATGAAATCATTAGAGCATATGCACAGGATCACTTATTTGATGTCATTACTAATTCTGTTGGATTAGCTGCTGCTGTTCTAGCTGTCAAGTTCTACTGGTGGATTGATCCAACAGGAGCTATTGTTATAGCATTGTATACAATTAATACATGGACCAAGACTGTCATTGAGAATGTTGGTTCACTCATTGGAAGAACAGCACCACCTGATTTTCTGGCCAAGTTAACTTATCTCATATGGAATCACCATGAGCAGATCAAGCACATAGATACTGTTAGAGCATACACCTTTGGTGCACATTACTTTGTGGAAGTTGACATTGTGTTGCCAGAAGACATGCTTCTCCACCAAGCACACAACATTGGTGAGACACTCCAAGTGAAGCTAGAGCAGCTTCCAGAAGTTGAAAGGGCTTTTGTGCACATAGATTTTGAGTTCACTCATAGGCCAGAGCACAATACCATGGTATGA
Predicted protein sequences of Glyma15g41590
>Glyma15g41590.2   sequence type=predicted peptide   gene model=Glyma15g41590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MISIVLEICFLLHTTNTYSPRIKKKTTKLLLLFFSSHSLRTLIFIIIPSLKSCFQGTSMAESDGRHRRREPLPVSSEEDAANASWRLNVEEFRLPNQTHDHHQQHRSFTFRGLLRKPRKQRKVAEYYKKQESLLEGFNEMETMTETGGFPGTLTEDELKQLAKSERIAVHVSNICNLVLFVAKVYASVASRSLAVIASTMDSLLDLLSGFILWFTAHAMKNPNQYRYPIGKKRMQPVGIIVFASVMATLGLQILIESGRQLISKVKPDMDSAKLHWMMGIMVFVTVVKFILMVYCRRFKNEIIRAYAQDHLFDVITNSVGLAAAVLAVKFYWWIDPTGAIVIALYTINTWTKTVIENVGSLIGRTAPPDFLAKLTYLIWNHHEQIKHIDTVRAYTFGAHYFVEVDIVLPEDMLLHQAHNIGETLQVKLEQLPEVERAFVHIDFEFTHRPEHNTMV*






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