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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G12760 | AT | Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Defective-in-cullin neddylation protein (InterPro:IPR014764), Protein of unknown function DUF298 (InterPro:IPR005176), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF298) (TAIR:AT1G15860.2); Has 857 Blast hits to 855 proteins in 202 species: Archae - 0; Bacteria - 0; Metazoa - 482; Fungi - 154; Plants - 139; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink). | chr3:4054963-4056826 FORWARD LENGTH=250 | SoyBase | E_val: 3.00E-142 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG3077 | KOG | Uncharacterized conserved protein | JGI | ISS | |
| PTHR12281 | Panther | RP42 RELATED | JGI | ISS | |
| PF03556 | PFAM | Domain of unknown function (DUF298) | JGI | ISS | |
| UniRef100_B9RYL4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Defective in cullin neddylation protein, putative n=1 Tax=Ricinus communis RepID=B9RYL4_RICCO | SoyBase | E_val: 8.00E-165 | ISS |
| UniRef100_I1MJC8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MJC8_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma15g41570 not represented in the dataset |
Glyma15g41570 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma08g17580 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g262200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g41570.2 sequence type=transcript gene model=Glyma15g41570 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATAAAATCCAAGCTTTATTATTCTCTCTCTTCTCCATGGCCATGGTAAGTAGTGTCCAATTCTGAGTGAGCCAAAACCAAAACTCACCTTTCGCATCCCTCAGCTCTCCATCCCATTCGGAACCAAATTTCAGTTCCACCCAAAACCCTAATTTTCTTTCTCTCCCGCACCTAGATCTTCAGGTTTTAGGCACCTTCCGCCATGCACAAATTGGGAAGAGGTCATCGTGACAAACTCCAGCAGTTCATAACAATAACTGGAGCCAGTGAGAAAATAGCACTGCAGGCTCTGAAGGCTAGTGATTGGCATCTTGAAGGAGCATTTGATTTCTTTTACAACCAACCCCAGCTTAAAACATTTACTGATTCTAGGCACTTGGAGGAGCTATACAATAGATATAAAGATGCATATGTTGATATGATTTTGGCAGATGGCATCACTGTCCTTTGCAATGATATCCAGGTGGATCCTCAAGATATAGTAATGTTAGTTCTTTCATGGCACATGAAGGCTGGAACCATGTGTGAATTTTCCAAGAAGGAGTTTATTGAAGGTTTACAGTCTTTGGGGATTGATTCTCTGGATAAGTTCCGTGAAAAGATACCATATATGCGCTCTGAGCTGAAAGATGAACAGAAATTCCGCGAGATATATAACTTTGCTTTTGGCTGGGCAAAAGAGAAGGGTCAAAAATCTCTTGCATTGGATACAGCTATTGGTATGTGGCAATTATTATTTGCTGAGAAGCAGTGGCCACTTGTTGATCATTGGTGCCAGTTCTTGCAGGTAATTTACTTGATTGTTTTTCATATACACCTTTTTAACTTTCTCGATTATGTTTGAAGCTTTCTTATTAGGATGGCTTTCAGTGGGAGATCAGATATCTGCTAATACTCAATCATTTTACTTAAATTGATAATTTTGATACTACATACTCAGGCTCGGCATAACAAAGCAATATCTAGGGACACATGGTCTCAGCTTTTGGAGTTTGCAAAGACTGTTGGCTCAAATTTATCTGATTATGATGCCGAAGGTGCTTGGCCATATCTTATTGATGAATTTGTGGAATATCTGAACGAGAATGGCATCATCCAAAATGGCCTGATCAATGATTCTAGTCTAAAATGGTGATGCATTCAGATCTCAATAAATTGCTCTTTAAGAGAATTTGATAAGCCTCTTGTGATGAGTTGTGCTATTCTGTGATTGAACTCCTCTTTGTTATTAAGTGGGATTCAGTCTAAATTAGATTCTAGAGCAAACTCATTCTTGTTGACAAGTAGTTGCATCATTTGTGAGATTGTTGATATGGCATATGAATTTCCTTGGGTATTGTGGAATTAGTAATGGGAGCCTACTAATTCCACGGTGTTATAGTTTCTGGTCTCTTTTAATTTAATAATTAATTCTTGAACGATGATGTCTTGTTAGAAGATAAGAGACTTATGTAATTGTTGTTAGCTGTCCTTGTTTCTGGTCTACTTTCATCTTGTAAAATATGTGGCACCAAGTTATTAAAACATTCATGAAATAGAGAAGGGGAAAAAATAACTATTATGTGGGTCTGTTTTCCTTTGAACTATTTAGAAGCAATACCTTGCATATCGGTTC
>Glyma15g41570.1 sequence type=CDS gene model=Glyma15g41570 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCACAAATTGGGAAGAGGTCATCGTGACAAACTCCAGCAGTTCATAACAATAACTGGAGCCAGTGAGAAAATAGCACTGCAGGCTCTGAAGGCTAGTGATTGGCATCTTGAAGGAGCATTTGATTTCTTTTACAACCAACCCCAGCTTAAAACATTTACTGATTCTAGGCACTTGGAGGAGCTATACAATAGATATAAAGATGCATATGTTGATATGATTTTGGCAGATGGCATCACTGTCCTTTGCAATGATATCCAGGTGGATCCTCAAGATATAGTAATGTTAGTTCTTTCATGGCACATGAAGGCTGGAACCATGTGTGAATTTTCCAAGAAGGAGTTTATTGAAGGTTTACAGTCTTTGGGGATTGATTCTCTGGATAAGTTCCGTGAAAAGATACCATATATGCGCTCTGAGCTGAAAGATGAACAGAAATTCCGCGAGATATATAACTTTGCTTTTGGCTGGGCAAAAGAGAAGGGTCAAAAATCTCTTGCATTGGATACAGCTATTGGTATGTGGCAATTATTATTTGCTGAGAAGCAGTGGCCACTTGTTGATCATTGGTGCCAGTTCTTGCAGGCTCGGCATAACAAAGCAATATCTAGGGACACATGGTCTCAGCTTTTGGAGTTTGCAAAGACTGTTGGCTCAAATTTATCTGATTATGATGCCGAAGGTGCTTGGCCATATCTTATTGATGAATTTGTGGAATATCTGAACGAGAATGGCATCATCCAAAATGGCCTGATCAATGATTCTAGTCTAAAATGGTGA >Glyma15g41570.2 sequence type=CDS gene model=Glyma15g41570 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCACAAATTGGGAAGAGGTCATCGTGACAAACTCCAGCAGTTCATAACAATAACTGGAGCCAGTGAGAAAATAGCACTGCAGGCTCTGAAGGCTAGTGATTGGCATCTTGAAGGAGCATTTGATTTCTTTTACAACCAACCCCAGCTTAAAACATTTACTGATTCTAGGCACTTGGAGGAGCTATACAATAGATATAAAGATGCATATGTTGATATGATTTTGGCAGATGGCATCACTGTCCTTTGCAATGATATCCAGGTGGATCCTCAAGATATAGTAATGTTAGTTCTTTCATGGCACATGAAGGCTGGAACCATGTGTGAATTTTCCAAGAAGGAGTTTATTGAAGGTTTACAGTCTTTGGGGATTGATTCTCTGGATAAGTTCCGTGAAAAGATACCATATATGCGCTCTGAGCTGAAAGATGAACAGAAATTCCGCGAGATATATAACTTTGCTTTTGGCTGGGCAAAAGAGAAGGGTCAAAAATCTCTTGCATTGGATACAGCTATTGGTATGTGGCAATTATTATTTGCTGAGAAGCAGTGGCCACTTGTTGATCATTGGTGCCAGTTCTTGCAGGTAATTTACTTGATTGTTTTTCATATACACCTTTTTAACTTTCTCGATTATGTTTGA
>Glyma15g41570.1 sequence type=predicted peptide gene model=Glyma15g41570 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MHKLGRGHRDKLQQFITITGASEKIALQALKASDWHLEGAFDFFYNQPQLKTFTDSRHLEELYNRYKDAYVDMILADGITVLCNDIQVDPQDIVMLVLSWHMKAGTMCEFSKKEFIEGLQSLGIDSLDKFREKIPYMRSELKDEQKFREIYNFAFGWAKEKGQKSLALDTAIGMWQLLFAEKQWPLVDHWCQFLQARHNKAISRDTWSQLLEFAKTVGSNLSDYDAEGAWPYLIDEFVEYLNENGIIQNGLINDSSLKW* >Glyma15g41570.2 sequence type=predicted peptide gene model=Glyma15g41570 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MHKLGRGHRDKLQQFITITGASEKIALQALKASDWHLEGAFDFFYNQPQLKTFTDSRHLEELYNRYKDAYVDMILADGITVLCNDIQVDPQDIVMLVLSWHMKAGTMCEFSKKEFIEGLQSLGIDSLDKFREKIPYMRSELKDEQKFREIYNFAFGWAKEKGQKSLALDTAIGMWQLLFAEKQWPLVDHWCQFLQVIYLIVFHIHLFNFLDYV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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