SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G79550 | AT | Annotation by Michelle Graham. TAIR10: phosphoglycerate kinase | chr1:29924347-29926295 REVERSE LENGTH=401 | SoyBase | E_val: 0 | ISS |
| GO:0006096 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glycolysis | SoyBase | N/A | ISS |
| GO:0034976 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress | SoyBase | N/A | ISS |
| GO:0046685 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to arsenic-containing substance | SoyBase | N/A | ISS |
| GO:0046686 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cadmium ion | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005774 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0048046 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: apoplast | SoyBase | N/A | ISS |
| GO:0004618 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphoglycerate kinase activity | SoyBase | N/A | ISS |
| KOG1367 | KOG | 3-phosphoglycerate kinase | JGI | ISS | |
| PTHR11406 | Panther | PHOSPHOGLYCERATE KINASE | JGI | ISS | |
| PF00162 | PFAM | Phosphoglycerate kinase | JGI | ISS | |
| UniRef100_I1MJC7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Phosphoglycerate kinase n=1 Tax=Glycine max RepID=I1MJC7_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MJC7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Phosphoglycerate kinase n=1 Tax=Glycine max RepID=I1MJC7_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma15g41550 not represented in the dataset |
Glyma15g41550 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma08g17600 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g262100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g41550.1 sequence type=CDS gene model=Glyma15g41550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGACTAAGAGGAGCGTGGGAACGTTGAAGGAGGGTGATTTGAAGGGGAAGAGGGTATTCGTGAGGGTCGATCTGAACGTGCCTTTGGATGACAACCTTAACATCACCGATGACACTAGAGTCCGTGCTGCTGTTCCCACCATCAAGTACTTGACTGGTTATGGTGCTAAAGTGATCCTTTCTAGCCATTTGGGACGTCCAAAAGGTGTAACACCTAAATACAGTTTGAAGCCTCTTGTGCCAAGGCTGTCTCAACTTCTTGGAATTGAGGTTACGATGGCCAATGACTCTATTGGGGAGGAAGTTGAAAAGTTGGTTACACAACTTCCAGAAGGTGGTGTTTTGCTTCTAGAGAATGTGAGGTTCTACAAGGAGGAAGAGAAGAATGATCCTGAATTTGCAAAGAAGTTGGCTTCTCTAGCTGATCTCTATGTGAATGATGCATTTGGCACTGCCCACAGAGCTCATGCTTCTACAGAAGGAGTTGCCAAATACTTGAAGCCCTCTGTTGCAGGATTCCTAATGCAGAAGGAGCTTGATTATCTAGTTGGGGCTGTGTCAAACCCCAAGAGACCATTTGCTGCTATTGTCGGTGGATCGAAGGTGTCTTCCAAGATTGGAGTTATTGAATCCTTGTTGGAGAAAGTTAATGTTCTCTTGCTTGGTGGAGGAATGATCTTTACCTTTTACAAGGCTCAGGGTTATTCAGTTGGGTCATCTCTTGTGGAGGAAGACAAGCTTAGCCTTGCAACTACACTTCTTGAAAAGGCCAAGGCTAAAGGGGTTTCTTTGTTGCTTCCAACTGATGTTGTCATAGCAGACAAGTTTGCTGCTGATGCTAACAGCAAGACTGTGCCGGCATCAAGCATCCCAGATGGGTGGATGGGGTTGGATATTGGTCCTGATTCCATCAAGACATTTGGTGAAGCATTGGATACGACTCAGACCATTATTTGGAATGGACCAATGGGTGTTTTTGAGTTTGATAAGTTTGCCACAGGAACAGAGGCTATAGCCAAGAAACTGGCAGAGCTGAGTGGGAAGGGAGTGACAACCATCATTGGAGGAGGTGACTCCGTTGCCGCTGTGGAGAAGGTTGGACTTGCAGACAAGATGAGCCACATCTCCACTGGTGGTGGTGCCAGCTTAGAGCTTCTTGAGGGAAAGCAACTCCCTGGTGTCCTTGCTCTTGATGATGCTTGA
>Glyma15g41550.1 sequence type=predicted peptide gene model=Glyma15g41550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MATKRSVGTLKEGDLKGKRVFVRVDLNVPLDDNLNITDDTRVRAAVPTIKYLTGYGAKVILSSHLGRPKGVTPKYSLKPLVPRLSQLLGIEVTMANDSIGEEVEKLVTQLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVAKYLKPSVAGFLMQKELDYLVGAVSNPKRPFAAIVGGSKVSSKIGVIESLLEKVNVLLLGGGMIFTFYKAQGYSVGSSLVEEDKLSLATTLLEKAKAKGVSLLLPTDVVIADKFAADANSKTVPASSIPDGWMGLDIGPDSIKTFGEALDTTQTIIWNGPMGVFEFDKFATGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKQLPGVLALDDA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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