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Report for Sequence Feature Glyma15g41540

Feature Type:gene_model
Chromosome:Gm15
Start:48629469
stop:48633178
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g41540
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G12780AT Annotation by Michelle Graham. TAIR10: phosphoglycerate kinase 1 | chr3:4061127-4063140 REVERSE LENGTH=481 SoyBaseE_val: 0ISS
GO:0000023GO-bp Annotation by Michelle Graham. GO Biological Process: maltose metabolic process SoyBaseN/AISS
GO:0006096GO-bp Annotation by Michelle Graham. GO Biological Process: glycolysis SoyBaseN/AISS
GO:0006098GO-bp Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt SoyBaseN/AISS
GO:0009409GO-bp Annotation by Michelle Graham. GO Biological Process: response to cold SoyBaseN/AISS
GO:0009658GO-bp Annotation by Michelle Graham. GO Biological Process: chloroplast organization SoyBaseN/AISS
GO:0009697GO-bp Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process SoyBaseN/AISS
GO:0009744GO-bp Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus SoyBaseN/AISS
GO:0009749GO-bp Annotation by Michelle Graham. GO Biological Process: response to glucose stimulus SoyBaseN/AISS
GO:0009814GO-bp Annotation by Michelle Graham. GO Biological Process: defense response, incompatible interaction SoyBaseN/AISS
GO:0010027GO-bp Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization SoyBaseN/AISS
GO:0018119GO-bp Annotation by Michelle Graham. GO Biological Process: peptidyl-cysteine S-nitrosylation SoyBaseN/AISS
GO:0019252GO-bp Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process SoyBaseN/AISS
GO:0019288GO-bp Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway SoyBaseN/AISS
GO:0019344GO-bp Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process SoyBaseN/AISS
GO:0019684GO-bp Annotation by Michelle Graham. GO Biological Process: photosynthesis, light reaction SoyBaseN/AISS
GO:0019760GO-bp Annotation by Michelle Graham. GO Biological Process: glucosinolate metabolic process SoyBaseN/AISS
GO:0019761GO-bp Annotation by Michelle Graham. GO Biological Process: glucosinolate biosynthetic process SoyBaseN/AISS
GO:0030003GO-bp Annotation by Michelle Graham. GO Biological Process: cellular cation homeostasis SoyBaseN/AISS
GO:0042742GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to bacterium SoyBaseN/AISS
GO:0042744GO-bp Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide catabolic process SoyBaseN/AISS
GO:0046686GO-bp Annotation by Michelle Graham. GO Biological Process: response to cadmium ion SoyBaseN/AISS
GO:0048481GO-bp Annotation by Michelle Graham. GO Biological Process: ovule development SoyBaseN/AISS
GO:0070838GO-bp Annotation by Michelle Graham. GO Biological Process: divalent metal ion transport SoyBaseN/AISS
GO:0005618GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cell wall SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009570GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma SoyBaseN/AISS
GO:0009579GO-cc Annotation by Michelle Graham. GO Cellular Compartment: thylakoid SoyBaseN/AISS
GO:0009941GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope SoyBaseN/AISS
GO:0010319GO-cc Annotation by Michelle Graham. GO Cellular Compartment: stromule SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0048046GO-cc Annotation by Michelle Graham. GO Cellular Compartment: apoplast SoyBaseN/AISS
GO:0004618GO-mf Annotation by Michelle Graham. GO Molecular Function: phosphoglycerate kinase activity SoyBaseN/AISS
KOG1367 KOG 3-phosphoglycerate kinase JGI ISS
PTHR11406Panther PHOSPHOGLYCERATE KINASE JGI ISS
PF00162PFAM Phosphoglycerate kinase JGI ISS
UniRef100_I1KTX8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Phosphoglycerate kinase n=1 Tax=Glycine max RepID=I1KTX8_SOYBN SoyBaseE_val: 0ISS
UniRef100_UPI0001B83779UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0001B83779 related cluster n=1 Tax=unknown RepID=UPI0001B83779 SoyBaseE_val: 0ISS

Expression Patterns of Glyma15g41540
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g41540
ParalogEvidenceComments
Glyma08g17610 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g41540 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g261900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma15g41540
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma15g41540
>Glyma15g41540.2   sequence type=transcript   gene model=Glyma15g41540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAGGTGGTGAAATACATGAGTGAAAAGCAAGGAAGATCTTGAACCTCTCCTGAACGATAAGAGAAATCCAAAATCCTCTCACCACACCCAATCGTTCCCGCGTTGTCCTCCACGTCCTCATCCTTTCATCACCTCTCTCTTCCACCAAACAATAAAAACCTCCAAACCCACTCCAGTTAACTCCATACACTCTCTCTCTCTCTCTCTCTCTCTCTCTACAATGGCCTCAGCCGCAGCCCCCACAACTTTCTCTCTCCTCCACTCCACCACCCCGGCCTCCTCCTCCTCCGCCACCTCCGCCTCCCCCTCGCGCGTGCAGCTCTCCTCCTCCCTCCGCTCGCGCCCGCTCGCGCGCCGCCTTGGCTTCGCCGCGGCGGACCCGCTGCTCGCGGCGAATGTCGCAGCGCGCGTCGCGGCGGTGAGAGGAGGAAAGGGCGCGAGGGGGGTGGTGTCGATGGCGAAGAAGAGCGTGGGGGAGCTGAGCGCGGCGGACCTGAAGGGGAAGAAGGTCTTCGTCAGGGCCGACCTCAACGTCCCGCTCGACGACAACCAGAACATCACCGACGACACCAGAATTCGCGCCGCCATTCCCACCATCAAACACCTAATCCAAAACGGCGCCAAAGTTATTCTCTCCAGCCACTTGGGGAGGCCGAAGGGTGTCACTCCCAAATACAGCTTGGCACCTCTTGTGCCCCGGCTTTCTGAGCTCATTGGTATCCAGGTTGTCAAGGCTGAAGACAGTATTGGTCCAGAAGTAGAAAAGTTGGTGGCTTCTCTTCCAGATGGAGGTGTTCTTCTTCTAGAAAATGTGAGGTTTTACAAGGAGGAAGAAAAGAATGATCCCGAGCATGCAAAAAAGCTTGCCTCTCTGGCAGATCTGTTTGTGAATGATGCATTTGGTACTGCTCACAGGGCACATGCATCAACAGAGGGTGTTACTAAATACCTGAAGCCATCTGTTGCTGGTTTTCTTTTGCAAAAGGTCGTGCCAGCATCTGCCATCCCTGATGGCTGGATGGGATTGGATATTGGTCCAGATTCTGTTAAATCATTCAGTGAAGCATTGGATACTACCCAAACCATCATATGGAATGGACCAATGGGAGTGTTTGAGTTTGACAAGTTTGCTGTTGGTACAGAGGCTATTGCAAAGAAGCTGGCTGATCTCAGTGGAAAGGGGGTGACCACAATTATCGGAGGAGGAGATTCTGTTGCAGCTGTGGAGAAAGTAGGAGTTGCTAGTGTCATGAGCCACATATCTACTGGTGGTGGTGCCAGTTTGGAGTTATTGGAAGGCAAAGAGCTTCCAGGAGTCCTTGCTCTCGATGAAGCCGTCCCAGTTGCCGTGTAAGACAATTTTCAGCTTGGAAAATTTTTCCATCCTCAGATTTCGGTGTTGTCAATCTTGTAAAAGAGCATATGTTGTAGGACCCTTCGGAGTCTGTTAGTGTAAATTTTATCATGCTTGAGTTATTATTGGCTTCACACATAAATTGCGTGTAACTGTAAACCCTGGCTGAGAGCCATAAATTCGAATAAATCTTTTAGTTGCTGCCAGAAGCTTTTTGCACTTTGCTTTTATATTATGTCAACTCCTGATTCTTGAATATGAACCTATGAACCAAGTTTAGCCTTTGGAGTTGGCACTGGTTGTATCCAATGACATGACTTACAATTTGTCAATAAACGTGGACACCAATGAATTCTCGTG
Coding sequences of Glyma15g41540
>Glyma15g41540.1   sequence type=CDS   gene model=Glyma15g41540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCTCAGCCGCAGCCCCCACAACTTTCTCTCTCCTCCACTCCACCACCCCGGCCTCCTCCTCCTCCGCCACCTCCGCCTCCCCCTCGCGCGTGCAGCTCTCCTCCTCCCTCCGCTCGCGCCCGCTCGCGCGCCGCCTTGGCTTCGCCGCGGCGGACCCGCTGCTCGCGGCGAATGTCGCAGCGCGCGTCGCGGCGGTGAGAGGAGGAAAGGGCGCGAGGGGGGTGGTGTCGATGGCGAAGAAGAGCGTGGGGGAGCTGAGCGCGGCGGACCTGAAGGGGAAGAAGGTCTTCGTCAGGGCCGACCTCAACGTCCCGCTCGACGACAACCAGAACATCACCGACGACACCAGAATTCGCGCCGCCATTCCCACCATCAAACACCTAATCCAAAACGGCGCCAAAGTTATTCTCTCCAGCCACTTGGGGAGGCCGAAGGGTGTCACTCCCAAATACAGCTTGGCACCTCTTGTGCCCCGGCTTTCTGAGCTCATTGGTATCCAGGTTGTCAAGGCTGAAGACAGTATTGGTCCAGAAGTAGAAAAGTTGGTGGCTTCTCTTCCAGATGGAGGTGTTCTTCTTCTAGAAAATGTGAGGTTTTACAAGGAGGAAGAAAAGAATGATCCCGAGCATGCAAAAAAGCTTGCCTCTCTGGCAGATCTGTTTGTGAATGATGCATTTGGTACTGCTCACAGGGCACATGCATCAACAGAGGGTGTTACTAAATACCTGAAGCCATCTGTTGCTGGTTTTCTTTTGCAAAAGGAACTTGATTACCTTGTTGGGGCGGTATCAAGCCCCAAAAGGCCATTTGCTGCCATTGTTGGTGGTTCCAAGGTCTCATCTAAAATTGGAGTGATTGAGTCACTTTTGGAAAAAGTTGACATTCTTCTTCTTGGTGGAGGAATGATCTTCACATTTTACAAGGCACAAGGTCTTTCAGTGGGTTCATCCCTTGTAGAAGAAGATAAGTTGGATCTTGCTACATCACTACTTGCAAAAGCCAAGGAAAAGGGGGTGTCTCTCTTGTTACCAAGTGATGTGGTGATTGCAGACAAATTTGCCCCCGATGCAAACAGCAAGGTCGTGCCAGCATCTGCCATCCCTGATGGCTGGATGGGATTGGATATTGGTCCAGATTCTGTTAAATCATTCAGTGAAGCATTGGATACTACCCAAACCATCATATGGAATGGACCAATGGGAGTGTTTGAGTTTGACAAGTTTGCTGTTGGTACAGAGGCTATTGCAAAGAAGCTGGCTGATCTCAGTGGAAAGGGGGTGACCACAATTATCGGAGGAGGAGATTCTGTTGCAGCTGTGGAGAAAGTAGGAGTTGCTAGTGTCATGAGCCACATATCTACTGGTGGTGGTGCCAGTTTGGAGTTATTGGAAGGCAAAGAGCTTCCAGGAGTCCTTGCTCTCGATGAAGCCGTCCCAGTTGCCGTGTAA

>Glyma15g41540.2   sequence type=CDS   gene model=Glyma15g41540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCTCAGCCGCAGCCCCCACAACTTTCTCTCTCCTCCACTCCACCACCCCGGCCTCCTCCTCCTCCGCCACCTCCGCCTCCCCCTCGCGCGTGCAGCTCTCCTCCTCCCTCCGCTCGCGCCCGCTCGCGCGCCGCCTTGGCTTCGCCGCGGCGGACCCGCTGCTCGCGGCGAATGTCGCAGCGCGCGTCGCGGCGGTGAGAGGAGGAAAGGGCGCGAGGGGGGTGGTGTCGATGGCGAAGAAGAGCGTGGGGGAGCTGAGCGCGGCGGACCTGAAGGGGAAGAAGGTCTTCGTCAGGGCCGACCTCAACGTCCCGCTCGACGACAACCAGAACATCACCGACGACACCAGAATTCGCGCCGCCATTCCCACCATCAAACACCTAATCCAAAACGGCGCCAAAGTTATTCTCTCCAGCCACTTGGGGAGGCCGAAGGGTGTCACTCCCAAATACAGCTTGGCACCTCTTGTGCCCCGGCTTTCTGAGCTCATTGGTATCCAGGTTGTCAAGGCTGAAGACAGTATTGGTCCAGAAGTAGAAAAGTTGGTGGCTTCTCTTCCAGATGGAGGTGTTCTTCTTCTAGAAAATGTGAGGTTTTACAAGGAGGAAGAAAAGAATGATCCCGAGCATGCAAAAAAGCTTGCCTCTCTGGCAGATCTGTTTGTGAATGATGCATTTGGTACTGCTCACAGGGCACATGCATCAACAGAGGGTGTTACTAAATACCTGAAGCCATCTGTTGCTGGTTTTCTTTTGCAAAAGGTCGTGCCAGCATCTGCCATCCCTGATGGCTGGATGGGATTGGATATTGGTCCAGATTCTGTTAAATCATTCAGTGAAGCATTGGATACTACCCAAACCATCATATGGAATGGACCAATGGGAGTGTTTGAGTTTGACAAGTTTGCTGTTGGTACAGAGGCTATTGCAAAGAAGCTGGCTGATCTCAGTGGAAAGGGGGTGACCACAATTATCGGAGGAGGAGATTCTGTTGCAGCTGTGGAGAAAGTAGGAGTTGCTAGTGTCATGAGCCACATATCTACTGGTGGTGGTGCCAGTTTGGAGTTATTGGAAGGCAAAGAGCTTCCAGGAGTCCTTGCTCTCGATGAAGCCGTCCCAGTTGCCGTGTAA
Predicted protein sequences of Glyma15g41540
>Glyma15g41540.1   sequence type=predicted peptide   gene model=Glyma15g41540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASAAAPTTFSLLHSTTPASSSSATSASPSRVQLSSSLRSRPLARRLGFAAADPLLAANVAARVAAVRGGKGARGVVSMAKKSVGELSAADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAIPTIKHLIQNGAKVILSSHLGRPKGVTPKYSLAPLVPRLSELIGIQVVKAEDSIGPEVEKLVASLPDGGVLLLENVRFYKEEEKNDPEHAKKLASLADLFVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLEKVDILLLGGGMIFTFYKAQGLSVGSSLVEEDKLDLATSLLAKAKEKGVSLLLPSDVVIADKFAPDANSKVVPASAIPDGWMGLDIGPDSVKSFSEALDTTQTIIWNGPMGVFEFDKFAVGTEAIAKKLADLSGKGVTTIIGGGDSVAAVEKVGVASVMSHISTGGGASLELLEGKELPGVLALDEAVPVAV*

>Glyma15g41540.2   sequence type=predicted peptide   gene model=Glyma15g41540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASAAAPTTFSLLHSTTPASSSSATSASPSRVQLSSSLRSRPLARRLGFAAADPLLAANVAARVAAVRGGKGARGVVSMAKKSVGELSAADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAIPTIKHLIQNGAKVILSSHLGRPKGVTPKYSLAPLVPRLSELIGIQVVKAEDSIGPEVEKLVASLPDGGVLLLENVRFYKEEEKNDPEHAKKLASLADLFVNDAFGTAHRAHASTEGVTKYLKPSVAGFLLQKVVPASAIPDGWMGLDIGPDSVKSFSEALDTTQTIIWNGPMGVFEFDKFAVGTEAIAKKLADLSGKGVTTIIGGGDSVAAVEKVGVASVMSHISTGGGASLELLEGKELPGVLALDEAVPVAV*






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