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Report for Sequence Feature Glyma15g41486

Feature Type:gene_model
Chromosome:Gm15
Start:48589042
stop:48592291
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g41486
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G56170AT Annotation by Michelle Graham. TAIR10: nuclear factor Y, subunit C2 | chr1:21025118-21025717 FORWARD LENGTH=199 SoyBaseE_val: 2.00E-78ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0045893GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0016602GO-cc Annotation by Michelle Graham. GO Cellular Compartment: CCAAT-binding factor complex SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0043565GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding SoyBaseN/AISS
KOG1657 KOG CCAAT-binding factor, subunit C (HAP5) JGI ISS
PTHR10252Panther HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED JGI ISS
PTHR10252:SF6Panther CCAAT-BINDING TRANSCRIPTION FACTOR JGI ISS
PF00808PFAM Histone-like transcription factor (CBF/NF-Y) and archaeal histone JGI ISS
UniRef100_C6TNG0UniRef Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6TNG0_SOYBN SoyBaseE_val: 0ISS
UniRef100_I3TAY1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Nuclear transcription factor Y subunit C4 n=1 Tax=Medicago truncatula RepID=I3TAY1_MEDTR SoyBaseE_val: 6.00E-131ISS

Expression Patterns of Glyma15g41486
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g41486 not represented in the dataset
Glyma15g41486 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g41486
ParalogEvidenceComments
Glyma08g17630 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g41486 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g261300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma15g41486
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma15g41486
>Glyma15g41486.2   sequence type=transcript   gene model=Glyma15g41486   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACTCTCTCTCTCTCTAGAACACAACACAGTCTCTTCAATTTCAAACGCACACTCTTCAACTTCACTGTCCCTCCCTTTTTAATTGAAACCAAACCAAACCAAACCAAACCTCTCTTTCTCAGTTTCTCTCTCTTAGGGTTTTCTCCTCCCCCATTGACCCACCGTCCATCGCAAAGGAAGTCGCGCCCAATTTCCATGGAACTGTAAAGAGATTATAGTTTGTAGATTAAATCTTAAAGCAGTAAGTCATCATGGATAAATCAGAGCAGACTCAGCAGCAACATCAGCATGGGATGGGCGTTGCCACAGGTGCTAGCCAAATGGCCTATTCTTCTCACTACCCGACTGCTCCCATGGTGGCTTCTGGCACGCCTGCTGTAGCTGTTCCTTCCCCAACTCAGGCTCCAGCTGCCTTCTCTAGTTCTGCTCACCAGCTTGCATACCAGCAAGCACAGCATTTCCACCACCAACAGCAGCAACACCAACAACAGCAGCTTCAAATGTTCTGGTCAAACCAAATGCAAGAAATTGAGCAAACAATTGACTTTAAAAACCACAGTCTTCCTCTTGCTCGGATAAAAAAGATAATGAAAGCTGATGAAGATGTCCGGATGATTTCTGCAGAAGCTCCAGTCATATTTGCAAAAGCATGTGAAATGTTCATATTAGAGTTGACGTTGAGATCTTGGATCCACACAGAAGAGAACAAGAGGAGAACTCTACAAAAGAATGATATAGCAGCTGCTATTTCGAGAAACGATGTTTTTGATTTCTTGGTTGATATTATCCCAAGAGATGAGTTGAAAGAGGAAGGACTTGGAATAACCAAGGCTACTATTCCATTGGTGAATTCTCCAGCTGATATGCCATATTACTATGTCCCTCCACAGCATCCTGTTGTAGGACCTCCTGGGATGATCATGGGCAAGCCCGTTGGTGCTGAGCAAGCAACGCTGTATTCTACACAGCAGCCTCGACCTCCCATGGCGTTCATGCCATGGCCCCATACACAACCCCAGCAACAGCAGCCACCCCAACATCAACAAACAGACTCATGATGACAATGCAATTCAATTAGGTCGGAAAGTAGCATGCACCTTATGATTATTACAAATTTACTTAATGCCTTTAAGTCAGCTGTAGTTTAGTGTTTTGCATTGAAAAATGCCAAAGATTGTTTGAGGTTTCTTGCACTCATTTATGATTGTATGAGCTCTTATGCTGAGTTACTTTTGGTTGTGTTTATTTGAGGTACTGGTGTGGTAGTTAAATTAGTTTGTAGCTGTCCATAAGTAAACAGCGTAGCTGCTTAATTAGGAGGTCTGAAATGATGAAATAGTTTGTATTGTTATTGCAGAAGGTAGGTTTTATTCAGTATTTCATTCTATTGCAATGGCTGAATTTAATGCTCATCCGCTTAGTACTAGTTGATGTTTTTTCTTGTCACTCGTTACGTGTTGAGTGTGAAGAAGAATTAGTGTGCCATATTTATTCTTCCCCTGTTCTTGCACACTACAGCCCCGGAAGAACAAATT
Coding sequences of Glyma15g41486
>Glyma15g41486.1   sequence type=CDS   gene model=Glyma15g41486   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATAAATCAGAGCAGACTCAGCAGCAACATCAGCATGGGATGGGCGTTGCCACAGGTGCTAGCCAAATGGCCTATTCTTCTCACTACCCGACTGCTCCCATGGTGGCTTCTGGCACGCCTGCTGTAGCTGTTCCTTCCCCAACTCAGGCTCCAGCTGCCTTCTCTAGTTCTGCTCACCAGCTTGCATACCAGCAAGCACAGCATTTCCACCACCAACAGCAGCAACACCAACAACAGCAGCTTCAAATGTTCTGGTCAAACCAAATGCAAGAAATTGAGCAAACAATTGACTTTAAAAACCACAGTCTTCCTCTTGCTCGGATAAAAAAGATAATGAAAGCTGATGAAGATGTCCGGATGATTTCTGCAGAAGCTCCAGTCATATTTGCAAAAGCATGTGAAATGTTCATATTAGAGTTGACGTTGAGATCTTGGATCCACACAGAAGAGAACAAGAGGAGAACTCTACAAAAGAATGATATAGCAGCTGCTATTTCGAGAAACGATGTTTTTGATTTCTTGGTTGATATTATCCCAAGAGATGAGTTGAAAGAGGAAGGACTTGGAATAACCAAGGCTACTATTCCATTGGTGAATTCTCCAGCTGATATGCCATATTACTATGTCCCTCCACAGCATCCTGTTGTAGGACCTCCTGGGATGATCATGGGCAAGCCCGTTGGTGCTGAGCAAGCAACGCTGTATTCTACACAGCAGCCTCGACCTCCCATGGCGTTCATGCCATGGCCCCATACACAACCCCAGCAACAGCAGCCACCCCAACATCAACAAACAGACTCATGA

>Glyma15g41486.2   sequence type=CDS   gene model=Glyma15g41486   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCGTTGCCACAGGTGCTAGCCAAATGGCCTATTCTTCTCACTACCCGACTGCTCCCATGGTGGCTTCTGGCACGCCTGCTGTAGCTGTTCCTTCCCCAACTCAGGCTCCAGCTGCCTTCTCTAGTTCTGCTCACCAGCTTGCATACCAGCAAGCACAGCATTTCCACCACCAACAGCAGCAACACCAACAACAGCAGCTTCAAATGTTCTGGTCAAACCAAATGCAAGAAATTGAGCAAACAATTGACTTTAAAAACCACAGTCTTCCTCTTGCTCGGATAAAAAAGATAATGAAAGCTGATGAAGATGTCCGGATGATTTCTGCAGAAGCTCCAGTCATATTTGCAAAAGCATGTGAAATGTTCATATTAGAGTTGACGTTGAGATCTTGGATCCACACAGAAGAGAACAAGAGGAGAACTCTACAAAAGAATGATATAGCAGCTGCTATTTCGAGAAACGATGTTTTTGATTTCTTGGTTGATATTATCCCAAGAGATGAGTTGAAAGAGGAAGGACTTGGAATAACCAAGGCTACTATTCCATTGGTGAATTCTCCAGCTGATATGCCATATTACTATGTCCCTCCACAGCATCCTGTTGTAGGACCTCCTGGGATGATCATGGGCAAGCCCGTTGGTGCTGAGCAAGCAACGCTGTATTCTACACAGCAGCCTCGACCTCCCATGGCGTTCATGCCATGGCCCCATACACAACCCCAGCAACAGCAGCCACCCCAACATCAACAAACAGACTCATGA
Predicted protein sequences of Glyma15g41486
>Glyma15g41486.1   sequence type=predicted peptide   gene model=Glyma15g41486   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDKSEQTQQQHQHGMGVATGASQMAYSSHYPTAPMVASGTPAVAVPSPTQAPAAFSSSAHQLAYQQAQHFHHQQQQHQQQQLQMFWSNQMQEIEQTIDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRNDVFDFLVDIIPRDELKEEGLGITKATIPLVNSPADMPYYYVPPQHPVVGPPGMIMGKPVGAEQATLYSTQQPRPPMAFMPWPHTQPQQQQPPQHQQTDS*

>Glyma15g41486.2   sequence type=predicted peptide   gene model=Glyma15g41486   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGVATGASQMAYSSHYPTAPMVASGTPAVAVPSPTQAPAAFSSSAHQLAYQQAQHFHHQQQQHQQQQLQMFWSNQMQEIEQTIDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRNDVFDFLVDIIPRDELKEEGLGITKATIPLVNSPADMPYYYVPPQHPVVGPPGMIMGKPVGAEQATLYSTQQPRPPMAFMPWPHTQPQQQQPPQHQQTDS*






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