Glyma15g41400 - SoyBase

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Report for Sequence Feature Glyma15g41400

Feature Type:	gene_model
Chromosome:	Gm15
Start:	48513938
stop:	48515766
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g41400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G30670	AT	Annotation by Michelle Graham. TAIR10: basic helix-loop-helix (bHLH) DNA-binding superfamily protein \| chr1:10879311-10880188 REVERSE LENGTH=264	SoyBase	E_val: 2.00E-28	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PF00010	PFAM	Helix-loop-helix DNA-binding domain	JGI		ISS
UniRef100_G8A0A1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: LAX n=1 Tax=Medicago truncatula RepID=G8A0A1_MEDTR	SoyBase	E_val: 3.00E-70	ISS
UniRef100_I1MJB5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MJB5_SOYBN	SoyBase	E_val: 1.00E-164	ISS

Expression Patterns of Glyma15g41400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g41400

Paralog	Evidence	Comments
Glyma08g17747	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g41400 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g260500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g41400

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g41400

Limit To All Plant Sequences

>Glyma15g41400.2   sequence type=CDS   gene model=Glyma15g41400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGCACTGAGCACGTACTCCAACTTTGACACTACTCTTCAAATTCCCCACTTAGAAACAAACACTTTCCATGAAGCCATGCCAGAAGTAGCAGCACCAAACCTCCAACATTTTCTTCCACACTCAGATGAAAGCCTCTTCCTTTCAAACGCGCTTTTTGAGAACTACATTGACCCAACTTGTGATTTTCTCTATACTCCCGAGATCAATCCCTTCACTTCACTCACTCATCATGATGACATTTTCCCAACTCATGAAGATTACAATCTTCTCCCATGCCCTAAACGCCAAAAGTGCTGCTACGAGAAAAACCAACAACAAGAACACGTGTTCTTTTCACTGCAAGAGCTTACTACATCAACACTTCCATCCAATTTCCTAGACAGGTATGCTGTGCCTTATGATAATAACTTCTCCTTCCAAGCAGAGGAACTCCAACAACAACTCTACGAGGTTCCACAATATGGTAGTACTTGTGTGGATCTTCAATGTGAGAAGAAAGGTTGCGAGAGAATCATATCTCCCCAGAGCGTAGCGGCAAGAGAAAGGAGAAGAAAGATCACTGAGAAAACTCAACAGCTTGGGAACTTGATTCCTGGTGGACCAAAGATGAACACAGCAGAGATGCTTCATGCAGCTGCGAAGTATGTTAAGTTCCTTCAAGCCCAAGTTGGAATGCTTGAACTCATGAACACATCCGAGGAATATAAAGCTGAATCTCATCCTGAAAATCTACATGCTCTAGTTGTTTCTCCCTTTGTTCAAGAGAAGCTGTACACGGAGGAAAGGTGCTTTGTGCCAAAAGAAATTGTCACCACTTTGGCAAATCATGAGGATCTTCAATCAAGACCTACCATCCTTGAGGATCTTAAACAGCTGATTAGGACAGACATTGAGAAGAAAGCAAAGAAAGAATAA

Predicted protein sequences of Glyma15g41400

Limit To All Plant Sequences

>Glyma15g41400.2   sequence type=predicted peptide   gene model=Glyma15g41400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMALSTYSNFDTTLQIPHLETNTFHEAMPEVAAPNLQHFLPHSDESLFLSNALFENYIDPTCDFLYTPEINPFTSLTHHDDIFPTHEDYNLLPCPKRQKCCYEKNQQQEHVFFSLQELTTSTLPSNFLDRYAVPYDNNFSFQAEELQQQLYEVPQYGSTCVDLQCEKKGCERIISPQSVAARERRRKITEKTQQLGNLIPGGPKMNTAEMLHAAAKYVKFLQAQVGMLELMNTSEEYKAESHPENLHALVVSPFVQEKLYTEERCFVPKEIVTTLANHEDLQSRPTILEDLKQLIRTDIEKKAKKE*

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