Glyma15g41370 - SoyBase

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Report for Sequence Feature Glyma15g41370

Feature Type:	gene_model
Chromosome:	Gm15
Start:	48486700
stop:	48494800
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g41370

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G79230	AT	Annotation by Michelle Graham. TAIR10: mercaptopyruvate sulfurtransferase 1 \| chr1:29800824-29803679 FORWARD LENGTH=379	SoyBase	E_val: 0	ISS
GO:0000394	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation	SoyBase	N/A	ISS
GO:0007568	GO-bp	Annotation by Michelle Graham. GO Biological Process: aging	SoyBase	N/A	ISS
GO:0009086	GO-bp	Annotation by Michelle Graham. GO Biological Process: methionine biosynthetic process	SoyBase	N/A	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0019761	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucosinolate biosynthetic process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0004792	GO-mf	Annotation by Michelle Graham. GO Molecular Function: thiosulfate sulfurtransferase activity	SoyBase	N/A	ISS
GO:0016783	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sulfurtransferase activity	SoyBase	N/A	ISS
GO:0016784	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 3-mercaptopyruvate sulfurtransferase activity	SoyBase	N/A	ISS
KOG1529	KOG	Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase	JGI		ISS
PTHR11364	Panther	THIOSULFATE SULFERTANSFERASE	JGI		ISS
PF00581	PFAM	Rhodanese-like domain	JGI		ISS
UniRef100_I1MJB3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Sulfurtransferase n=1 Tax=Glycine max RepID=I1MJB3_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1MJB3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Sulfurtransferase n=1 Tax=Glycine max RepID=I1MJB3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g41370

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g41370

Paralog	Evidence	Comments
Glyma08g17760	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g41370 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g260300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g41370

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g41370

Limit To All Plant Sequences

>Glyma15g41370.1   sequence type=CDS   gene model=Glyma15g41370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTCGTTGATAAAATGGCTTCGACCCTTTTAACAAAGATGCTTTTGGGTCACCGATTGATACACCCTTCTTCGTTCCTCACTCACCAGCCACAGATTCTCTCTTCTCTATTCAGTAAACGGCTGTTTTGTATACGAGCTGTCCCGGTCTCAGCCTCTACATCCCAAAACATCAAAACAACTGGTTGGGCTCCTTGTATGGCTTCTTCCTCAGTTGGTAGAAGAGCTACATATTCAACACAATCTGTATCGACAAATGAGCCAGTTGTATCTGTAGATTGGCTTTATGATAACCTGAAGGAGCCAGATATCAAGGTACTAGATGCTTCGTGGTACATGCCGGATGAGCAGAGGAATCCAATTCAAGAATATCAGGTTGCTCACATTCCTGGTGCCCTTTTCTTTGATGTAGATGGAATAGCAGATCGGACTACAAAATTACCACACATGCTGCCATCAGCGGAAGCGTTTGCTGCTGCTGTTTCTGCTCTTGGCATAGAGAACAAAGATGATTTGGTTGTTTATGATGGAAAAGGATTATTTAGTGCAGCTCGTGTTTGGTGGATGTTCCGAGTATTTGGGCATGACAGAGTTTGGGTATTAGATGGTGGCCTGCCGAGATGGCGTGCATCAGGTTATGATGTTGAATCCAGTGCTTCAAGTGATGCTATTCTTAAAGCCAGTGCTGCTACTGAGGCTATAGAGAAAGTATATAAGGGACAAACAGTTGGCCCACTCACATTTCAGACTAAATTTCAGCCACATCTTGTTTGGAACATTGATCAGGTAAAGAAAAATATAGAGGACAAAACTCACCAACACATAGATGCTCGATCAAAGCCTAGATTTGATGGAACTGTACAAGAGCCTCGAAAGGGAATCAGAAGTGGTCATGTACCTGGTAGCAAATGCATCCCTTTTGCACAGTTGTTAGATAGTTCACAGACATTGTTACCAGCAGATGAGTTGAAGAAGCGATTTGAACAAGAAGGCATCTCTCTGGAAAGCCCAGCTGTGACTTCATGTGGAACAGGCGTAACTGCTTGCATTCTTGCATTGGGTCTTCATCGTCTTAGAAAGTCTGATGTTGCAGTTTATGATGGATCTTGGACTGAATGGGGAGCACAATCAAATACACCTGTTGACACTTTATGA

Predicted protein sequences of Glyma15g41370

Limit To All Plant Sequences

>Glyma15g41370.1   sequence type=predicted peptide   gene model=Glyma15g41370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVVDKMASTLLTKMLLGHRLIHPSSFLTHQPQILSSLFSKRLFCIRAVPVSASTSQNIKTTGWAPCMASSSVGRRATYSTQSVSTNEPVVSVDWLYDNLKEPDIKVLDASWYMPDEQRNPIQEYQVAHIPGALFFDVDGIADRTTKLPHMLPSAEAFAAAVSALGIENKDDLVVYDGKGLFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESSASSDAILKASAATEAIEKVYKGQTVGPLTFQTKFQPHLVWNIDQVKKNIEDKTHQHIDARSKPRFDGTVQEPRKGIRSGHVPGSKCIPFAQLLDSSQTLLPADELKKRFEQEGISLESPAVTSCGTGVTACILALGLHRLRKSDVAVYDGSWTEWGAQSNTPVDTL*

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