Report for Sequence Feature Glyma15g41030
Feature Type: gene_model
Chromosome: Gm15
Start: 48069265
stop: 48071737
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma15g41030
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G12890 AT
Annotation by Michelle Graham. TAIR10: activator of spomin::LUC2 | chr3:4099223-4100277 FORWARD LENGTH=251
SoyBase E_val: 9.00E-46 ISS
GO:0010182 GO-bp
Annotation by Michelle Graham. GO Biological Process: sugar mediated signaling pathway
SoyBase N/A ISS
GO:0045893 GO-bp
Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
PF06203 PFAM
CCT motif
JGI ISS
UniRef100_G7ITD4 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: CCT n=1 Tax=Medicago truncatula RepID=G7ITD4_MEDTR
SoyBase E_val: 1.00E-117 ISS
UniRef100_I1MJ96 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MJ96_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma15g41030
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma15g41030
Paralog Evidence Comments
Glyma08g17980 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma15g41030 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.15g258200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma15g41030
Coding sequences of Glyma15g41030
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma15g41030.2 sequence type=CDS gene model=Glyma15g41030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCCCCTTTCACCCTCTTCCATGGCTTCAATCCCACAATTCTATCCAAACTATACGTTCACCACTCACGATCTTTCCGAGTACCCTGTCCCTCTTCTCAATGGTGGCGGTAATGCCTCGGTTATGGACAGCACCACCATGTGGGGTGGTGGCCAAGATAGCTTGAGTATTCCTGTGCTGGATATGAACAATGGTGCACTTGATCATATTGTGTCGCTTGATTGTGACACCATGGCTTGTGCTGCTAATTGGATGCCTTCGTTTTCGGAGCAGCTCGGGGGGCTCTCGGATTTGGCCATTTCGGACTGCAAAATTGGGTTCTATGGAGGAGGGTTTCAGAGTTTCAATAACAGCAGATCGTACCAACCTCATGTTGGGGAGTTTGGAGATGAATGTTGTGGGTTTGTGGAGGATCTTAAGCCACCTCCTTATCCTAATGCTGCAAGAGAAAACTGGGGAATTGAAGGTAATCAAATGGCAGCAGTTGAGGAGCCTAACATAAAGGTAGGAAGGTACTCAGAAGAAGAGAGGAAAGAAAGAATTCTCCGATATTTGAAGAAAAGAAATCAAAGAAACTTTAACAAAACCATCAAGTACGCATGTCGGAAAACCTTAGCTGATAGGCGAGTCAGGGTTAGGGGAAGGTTTGCAAGAAACAATGAGCTTTGTGAAGAAGACATGGCAACCAAAAAGCATGAGAATCATCATCACCACAAAGAAGACTTTTATGGTGGCGATTCAATCCAGTTTCAGTTAAAGAACGATGAGGAGGATTGGCTTCAAGAGGCCATGGCAAGTCTAGTGTATTTATCTCATTCTTCACCGGAAGATATGTAA
Predicted protein sequences of Glyma15g41030
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma15g41030.2 sequence type=predicted peptide gene model=Glyma15g41030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MPLSPSSMASIPQFYPNYTFTTHDLSEYPVPLLNGGGNASVMDSTTMWGGGQDSLSIPVLDMNNGALDHIVSLDCDTMACAANWMPSFSEQLGGLSDLAISDCKIGFYGGGFQSFNNSRSYQPHVGEFGDECCGFVEDLKPPPYPNAARENWGIEGNQMAAVEEPNIKVGRYSEEERKERILRYLKKRNQRNFNKTIKYACRKTLADRRVRVRGRFARNNELCEEDMATKKHENHHHHKEDFYGGDSIQFQLKNDEEDWLQEAMASLVYLSHSSPEDM*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
