Glyma15g41000 - SoyBase

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Report for Sequence Feature Glyma15g41000

Feature Type:	gene_model
Chromosome:	Gm15
Start:	48004735
stop:	48005676
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g41000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G12900	AT	Annotation by Michelle Graham. TAIR10: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein \| chr3:4104576-4106112 FORWARD LENGTH=357	SoyBase	E_val: 1.00E-60	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0071281	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to iron ion	SoyBase	N/A	ISS
GO:0071369	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to ethylene stimulus	SoyBase	N/A	ISS
GO:0071732	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to nitric oxide	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0016706	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	SoyBase	N/A	ISS
PTHR10209	Panther	FE(II)/ ASCORBATE OXIDASE SUPERFAMILY	JGI		ISS
PTHR10209:SF55	Panther	OXIDOREDUCTASE, 2OG-FE(II) OXYGENASE FAMILY PROTEI	JGI		ISS
PF03171	PFAM	2OG-Fe(II) oxygenase superfamily	JGI		ISS
UniRef100_G7IGZ5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 1-aminocyclopropane-1-carboxylate oxidase n=1 Tax=Medicago truncatula RepID=G7IGZ5_MEDTR	SoyBase	E_val: 3.00E-75	ISS
UniRef100_I1MJ94	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MJ94_SOYBN	SoyBase	E_val: 1.00E-150	ISS

Expression Patterns of Glyma15g41000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g41000

Paralog	Evidence	Comments
Glyma08g18033	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g41000 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g257900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g41000

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g41000

Limit To All Plant Sequences

>Glyma15g41000.1   sequence type=CDS   gene model=Glyma15g41000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCTAAGTTTCAACACTTCAAATTCCTTGTATGATTTTGTGGTCAGAGAGGGCAATGGTGTTAAAGGCGTGGCAGATTTAGGTTTATCAGAGTTGCCAGAGAGGTACATAAAACCCCCAGAGGAACGAATGGACAAGCAAGATTCAAGGACATGTGATGCTCCACCCATTGACCTGTCAAAGCTCAATGTACCAGAGCATGAGAAAGTGGTGGATGAGATTGTGGTGAACCATGGTGTGCCTTTGGAGTTATTGGAATCACTTAAAGATGCAGCTCACACATTCTTCAACTTGCCACCAGAGAAGAAAGCTGTGTACCGCGCAGCAATTAGGCCAATCCTAGTCACAAAACTTGGGACTAGCTTTGTGCCTGAGAAAGTGGACCTGGGAATGGAAGGACTTTATCAAGGTATCGTCAAAATCTTGATTAGTAAGCTTGGGGTGTCAGCATATGGCTCAAGAATTGAGCAAATCCTGGGTGTGAAGATAGTTAACATGAACAATTACCCACCATGTCCAAATCCAGAGCTTACAGTTGGTGTAGGGCGTCACTCAGACTTGGGAACTATTACAGTGTTGCTGCAAGATGGAATTGGTGACTTATATGTTAAAATGGAAGAAGACAATTGTTGA

Predicted protein sequences of Glyma15g41000

Limit To All Plant Sequences

>Glyma15g41000.1   sequence type=predicted peptide   gene model=Glyma15g41000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALSFNTSNSLYDFVVREGNGVKGVADLGLSELPERYIKPPEERMDKQDSRTCDAPPIDLSKLNVPEHEKVVDEIVVNHGVPLELLESLKDAAHTFFNLPPEKKAVYRAAIRPILVTKLGTSFVPEKVDLGMEGLYQGIVKILISKLGVSAYGSRIEQILGVKIVNMNNYPPCPNPELTVGVGRHSDLGTITVLLQDGIGDLYVKMEEDNC*

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