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Report for Sequence Feature Glyma15g41000

Feature Type:gene_model
Chromosome:Gm15
Start:48004735
stop:48005676
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G12900AT Annotation by Michelle Graham. TAIR10: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr3:4104576-4106112 FORWARD LENGTH=357 SoyBaseE_val: 1.00E-60ISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0071281GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to iron ion SoyBaseN/AISS
GO:0071369GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to ethylene stimulus SoyBaseN/AISS
GO:0071732GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to nitric oxide SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0016491GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity SoyBaseN/AISS
GO:0016706GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors SoyBaseN/AISS
PTHR10209Panther FE(II)/ ASCORBATE OXIDASE SUPERFAMILY JGI ISS
PTHR10209:SF55Panther OXIDOREDUCTASE, 2OG-FE(II) OXYGENASE FAMILY PROTEI JGI ISS
PF03171PFAM 2OG-Fe(II) oxygenase superfamily JGI ISS
UniRef100_G7IGZ5UniRef Annotation by Michelle Graham. Most informative UniRef hit: 1-aminocyclopropane-1-carboxylate oxidase n=1 Tax=Medicago truncatula RepID=G7IGZ5_MEDTR SoyBaseE_val: 3.00E-75ISS
UniRef100_I1MJ94UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MJ94_SOYBN SoyBaseE_val: 1.00E-150ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma08g18033 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g257900 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma15g41000.1   sequence type=CDS   gene model=Glyma15g41000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCTAAGTTTCAACACTTCAAATTCCTTGTATGATTTTGTGGTCAGAGAGGGCAATGGTGTTAAAGGCGTGGCAGATTTAGGTTTATCAGAGTTGCCAGAGAGGTACATAAAACCCCCAGAGGAACGAATGGACAAGCAAGATTCAAGGACATGTGATGCTCCACCCATTGACCTGTCAAAGCTCAATGTACCAGAGCATGAGAAAGTGGTGGATGAGATTGTGGTGAACCATGGTGTGCCTTTGGAGTTATTGGAATCACTTAAAGATGCAGCTCACACATTCTTCAACTTGCCACCAGAGAAGAAAGCTGTGTACCGCGCAGCAATTAGGCCAATCCTAGTCACAAAACTTGGGACTAGCTTTGTGCCTGAGAAAGTGGACCTGGGAATGGAAGGACTTTATCAAGGTATCGTCAAAATCTTGATTAGTAAGCTTGGGGTGTCAGCATATGGCTCAAGAATTGAGCAAATCCTGGGTGTGAAGATAGTTAACATGAACAATTACCCACCATGTCCAAATCCAGAGCTTACAGTTGGTGTAGGGCGTCACTCAGACTTGGGAACTATTACAGTGTTGCTGCAAGATGGAATTGGTGACTTATATGTTAAAATGGAAGAAGACAATTGTTGA

>Glyma15g41000.1   sequence type=predicted peptide   gene model=Glyma15g41000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALSFNTSNSLYDFVVREGNGVKGVADLGLSELPERYIKPPEERMDKQDSRTCDAPPIDLSKLNVPEHEKVVDEIVVNHGVPLELLESLKDAAHTFFNLPPEKKAVYRAAIRPILVTKLGTSFVPEKVDLGMEGLYQGIVKILISKLGVSAYGSRIEQILGVKIVNMNNYPPCPNPELTVGVGRHSDLGTITVLLQDGIGDLYVKMEEDNC*







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