Glyma15g40950 - SoyBase

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Report for Sequence Feature Glyma15g40950

Feature Type:	gene_model
Chromosome:	Gm15
Start:	47942613
stop:	47945365
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g40950

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G12910	AT	Annotation by Michelle Graham. TAIR10: NAC (No Apical Meristem) domain transcriptional regulator superfamily protein \| chr3:4109417-4110648 FORWARD LENGTH=303	SoyBase	E_val: 2.00E-83	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PF02365	PFAM	No apical meristem (NAM) protein	JGI		ISS
UniRef100_C6TGY8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6TGY8_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_G7IGZ8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: NAC domain-containing protein n=1 Tax=Medicago truncatula RepID=G7IGZ8_MEDTR	SoyBase	E_val: 2.00E-147	ISS

Expression Patterns of Glyma15g40950

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g40950

Paralog	Evidence	Comments
Glyma08g18056	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g40950 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g257700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g40950

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g40950

Limit To All Plant Sequences

>Glyma15g40950.1   sequence type=CDS   gene model=Glyma15g40950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGTGAACGAAGATTTCAACCAGGATATTGATTATGATCATCATGAGTATGTGGATGATGATGATGTTCCTCTTCCGGGGTTTCGATTCCACCCTACAGATGAAGAACTTGTTAGTTTCTATCTTCAAAGGAAGCTTGACAAGAAACCCATCAGCATCGAGCTCATCAAACAGATTGATATTTACAAATACGATCCTTGGGATCTTCCGAAAACCAGTGCCACTGGAGGAGAGAAAGAAGGGTACTTCTTTTGCAGAAGAGGGAGGAAGTATAGGAACAGCATAAGGCCTAACAGAGTCACTGGCTCAGGGTTCTGGAAAGCAACTGGCATAGACAAGCCAGTGTACTCACATGGAGGAGAAGGCAATGACTGCATTGGCCTCAAAAAAACACTAGTGTATTACCGTGGCAGTGCAGGCAAAGGCATCAAAACTGATTGGATGATGCACGAGTTTCGCCTTCCTTCTAACACAGACAACAACAACACCAACCTTCGCAGCTCCAAGAATTACGTAGATGTTCCCCAAGAAGCCGAAATTTGGACATTGTGTCGAATTTTCAAGAGAAATGTCTCACAGAGGAAGCACACGCCAGACTTGAAACAAATATCAGCTAAGCGCCAATCCATTCATGACAAGAGTTCAAGAATGAGCAATGTGGAGTTCAATACTACTAATCAAGAATCATATATAAACTTTGGTGGCCACTATCACAATGAGCAGAAACCTACCATTAACTACACAAACAGTGATCAAAGGAATCAGTATCATGTGATGACTCATCATCAGTTGTGTGCTCCGGTGGCACAGCAGCATCAGCAACCTCAACAACTAACTTCACCATCTTCTAACTTTTGGATTAACAACCCACCTGGGAACGACTTCTTCACGTTTGATAACTGGGATGAGCTTGGATCTTTAGTGAAGTTTGCGGTTGATTCGCCTAGCTTGTAG

Predicted protein sequences of Glyma15g40950

Limit To All Plant Sequences

>Glyma15g40950.1   sequence type=predicted peptide   gene model=Glyma15g40950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGVNEDFNQDIDYDHHEYVDDDDVPLPGFRFHPTDEELVSFYLQRKLDKKPISIELIKQIDIYKYDPWDLPKTSATGGEKEGYFFCRRGRKYRNSIRPNRVTGSGFWKATGIDKPVYSHGGEGNDCIGLKKTLVYYRGSAGKGIKTDWMMHEFRLPSNTDNNNTNLRSSKNYVDVPQEAEIWTLCRIFKRNVSQRKHTPDLKQISAKRQSIHDKSSRMSNVEFNTTNQESYINFGGHYHNEQKPTINYTNSDQRNQYHVMTHHQLCAPVAQQHQQPQQLTSPSSNFWINNPPGNDFFTFDNWDELGSLVKFAVDSPSL*

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