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Report for Sequence Feature Glyma15g40911

Feature Type:gene_model
Chromosome:Gm15
Start:47902073
stop:47910671
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g40911
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G59540AT Annotation by Michelle Graham. TAIR10: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr5:23996293-23997576 REVERSE LENGTH=366 SoyBaseE_val: 2.00E-73ISS
GO:0010167GO-bp Annotation by Michelle Graham. GO Biological Process: response to nitrate SoyBaseN/AISS
GO:0015706GO-bp Annotation by Michelle Graham. GO Biological Process: nitrate transport SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0016491GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity SoyBaseN/AISS
GO:0016706GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors SoyBaseN/AISS
PTHR10209Panther FE(II)/ ASCORBATE OXIDASE SUPERFAMILY JGI ISS
PTHR10209:SF55Panther OXIDOREDUCTASE, 2OG-FE(II) OXYGENASE FAMILY PROTEI JGI ISS
PF03171PFAM 2OG-Fe(II) oxygenase superfamily JGI ISS
UniRef100_G7IH14UniRef Annotation by Michelle Graham. Best UniRef hit: 1-aminocyclopropane-1-carboxylate oxidase-like protein n=1 Tax=Medicago truncatula RepID=G7IH14_MEDTR SoyBaseE_val: 3.00E-97ISS
UniRef100_G7IH14UniRef Annotation by Michelle Graham. Most informative UniRef hit: 1-aminocyclopropane-1-carboxylate oxidase-like protein n=1 Tax=Medicago truncatula RepID=G7IH14_MEDTR SoyBaseE_val: 3.00E-97ISS

Expression Patterns of Glyma15g40911
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g40911 not represented in the dataset
Glyma15g40911 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g40911
ParalogEvidenceComments
Glyma08g18068 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g40911 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g257400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma15g40911
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma15g40911
>Glyma15g40911.1   sequence type=CDS   gene model=Glyma15g40911   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGATCACAAGAACAGATGAGTTGGAGGCAGGAACTGTTTCCAGTTATGACAGGATAAGTGAACTTAAGGCATTTGATGATTCAAAGGCTGGTGTCCAAGGACTGGTAGAAAATGGCATCCACGATGTTTTGCGAGATGATGTTGTGGGGAAACTTAGATATGCATGTGAAAAATGGGGCTTCTTTCAGGTCATAAACCATGGAATTCCAAGTGATGTTTTGGATGAGATGATCAAAGGTACTAGCAGGTTTCACCAACAAGACGCAAAGGCTAGGAAAGAGTACTACACCCGTGATCCGAACAGAAAAGTTGTTTATGTTTCCAATTATAGTCTATACCATGATCCTGCTGCTACTTGGAGGGACACTCTTTGTTGTGTGATGACACCTCATCCACCAGAAGCAGGAGAATTCAAGCACACAGACAATGACTTCTTAAAAATACTTTTGCAAGACCAGATAGGTGGTCTTCAAGTTCTTCATGACAACCAATGGGTTGATGTAACTCCCATCCATGGAGCCCTTGTAATAAACATTGGGGATCTTTTGCAGCTTCTTACTAATGACAAGTTCATCAGTGTTAAGCACAGAGTTTTAGCAAATCATATAGGTCCAAGAATTTCTGTTGCATCGTTGTTTAGAAAAGATGGTGATGACTCACTAGTCTATGGTCCAAACAAGGAGCTGTTATCTGAAGTAAATCCACCACTATACAGAGACGTTTCTTTAAAAGAGTACTTGACATATTATTATGCAAAGGGCATTGGAACTTCTGGACCATCACACTTCAAGTTGTGA
Predicted protein sequences of Glyma15g40911
>Glyma15g40911.1   sequence type=predicted peptide   gene model=Glyma15g40911   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVITRTDELEAGTVSSYDRISELKAFDDSKAGVQGLVENGIHDVLRDDVVGKLRYACEKWGFFQVINHGIPSDVLDEMIKGTSRFHQQDAKARKEYYTRDPNRKVVYVSNYSLYHDPAATWRDTLCCVMTPHPPEAGEFKHTDNDFLKILLQDQIGGLQVLHDNQWVDVTPIHGALVINIGDLLQLLTNDKFISVKHRVLANHIGPRISVASLFRKDGDDSLVYGPNKELLSEVNPPLYRDVSLKEYLTYYYAKGIGTSGPSHFKL*






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