Report for Sequence Feature Glyma15g40860
Feature Type: gene_model
Chromosome: Gm15
Start: 47868869
stop: 47873242
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma15g40860
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G56070 AT
Annotation by Michelle Graham. TAIR10: Ribosomal protein S5/Elongation factor G/III/V family protein | chr1:20968245-20971077 REVERSE LENGTH=843
SoyBase E_val: 0 ISS
GO:0009409 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to cold
SoyBase N/A ISS
GO:0005730 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleolus
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0005774 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane
SoyBase N/A ISS
GO:0005829 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytosol
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0009506 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
GO:0048046 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: apoplast
SoyBase N/A ISS
GO:0003746 GO-mf
Annotation by Michelle Graham. GO Molecular Function: translation elongation factor activity
SoyBase N/A ISS
GO:0003924 GO-mf
Annotation by Michelle Graham. GO Molecular Function: GTPase activity
SoyBase N/A ISS
GO:0005507 GO-mf
Annotation by Michelle Graham. GO Molecular Function: copper ion binding
SoyBase N/A ISS
GO:0005525 GO-mf
Annotation by Michelle Graham. GO Molecular Function: GTP binding
SoyBase N/A ISS
GO:0008135 GO-mf
Annotation by Michelle Graham. GO Molecular Function: translation factor activity, nucleic acid binding
SoyBase N/A ISS
KOG0469
KOG
Elongation factor 2
JGI ISS
PTHR23115 Panther
TRANSLATION FACTOR
JGI ISS
PTHR23115:SF4 Panther
EUKARYOTIC TRANSLATION ELONGATION FACTOR 2
JGI ISS
PF00009 PFAM
Elongation factor Tu GTP binding domain
JGI ISS
PF00679 PFAM
Elongation factor G C-terminus
JGI ISS
PF03144 PFAM
Elongation factor Tu domain 2
JGI ISS
PF03764 PFAM
Elongation factor G, domain IV
JGI ISS
UniRef100_G7IH33 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Elongation factor EF-2 n=1 Tax=Medicago truncatula RepID=G7IH33_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1MJ86 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MJ86_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma15g40860
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma15g40860
Paralog Evidence Comments
Glyma08g18110 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma15g40860 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.15g257100 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma15g40860
Coding sequences of Glyma15g40860
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma15g40860.1 sequence type=CDS gene model=Glyma15g40860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGTGAAGTTCACAGCTGAAGAGCTGCGTCGCATTATGGACTATAAGCATAATATCCGTAATATGTCTGTCATTGCCCATGTTGATCACGGAAAATCAACCCTGACTGATTCTCTTGTGGCTGCTGCTGGTATTATTGCTCAAGAAGTTGCAGGTGATGTCCGTATGACTGATACCCGTGCAGATGAAGCTGAGCGTGGTATTACAATCAAGTCTACGGGTATCTCACTCTACTATGAAATGACTGATGAAGCTCTCAAGAGTTTTAAGGGAGAGCGCAATGGGAATGAGTATCTTATTAATCTCATTGACTCCCCTGGGCACGTTGACTTCTCTTCTGAGGTTACTGCTGCACTTCGTATTACCGATGGAGCTCTTGTTGTGGTCGATTGTGTGGAAGGAGTTTGTGTCCAAACCGAAACTGTTCTACGACAAGCCCTTGGAGAAAGGATTAGGCCTGTTCTGACTGTCAATAAGATGGACAGGTGCTTCCTTGAACTCCAGGTTGACGGAGAGGAGGCTTACCAGACATTCCAGAGAGTTATTGAGAATGCTAATGTGATCATGGCTACATATGAAGATCCACTTCTCGGTGATGTTCAGGTCTATCCAGAGAAAGGAACAGTTGCTTTTTCTGCTGGTTTGCACGGCTGGGCTTTTACCCTGACTAACTTTGCCAAGATGTATGCATCTAAGTTTGGAGTTGATGAAGGAAAAATGATGGAAAGGCTCTGGGGTGAAAACTTCTTTGATCCAGCCACAAAGAAATGGTCCAGCAAGAATACTGGTTCTGCTACCTGCAAGCGTGGGTTTGTTCAGTTCTGTTACGAGCCCATCAAGCAGATTATTAACACTTGTATGAATGATCAGAAGGATAAGCTGTGGCCTATGCTGCAAAAGCTTGGGGTCACCATGAAATCTGAGGAGAAGGACCTAATGGGCAAAGCATTGATGAAGCGTGTCATGCAAACCTGGCTTCCAGCAAGTAGTGCATTACTGGAAATGATGATATTTCATCTACCCTCTCCATCAACAGCCCAGAAGTATCGTGTGGAGAATTTGTATGAGGGTCCCCTTGATGATCAATATGCTTCGGCTATCAGAAACTGTGATCCTGAGGGTCCTCTGATGCTCTATGTCTCAAAGATGATTCCAGCATCTGACAAGGGCAGATTTTTTGCTTTTGGTCGTGTATTCTCTGGCAGAGTTTCAACTGGTTTGAAGGTGAGGATTATGGGACCAAATTATGTCCCTGGGGAGAAGAAGGATTTGTATGTTAAAAGTGTTCAAAGAACTGTCATTTGGATGGGAAAAAGACAGGAAACTGTGGAAGATGTCCCCTGTGGTAACACTGTTGCTATGGTTGGTTTGGATCAGTTCATAACAAAGAATGCTACCTTGACTAATGAAAAGGAAGTTGATGCCCATCCCATTCGAGCTATGAAGTTTTCTGTCTCTCCTGTTGTTCGTGTTGCTGTTCAATGTAAGGTTGCATCAGATCTTCCCAAGCTTGTTGAAGGTCTTAAGCGGTTGGCCAAGTCAGATCCTATGGTTGTTTGTACCATTGAGGAGTCTGGTGAACACATTGTTGCTGGTGCAGGAGAGCTTCATCTTGAGATCTGTTTGAAGGACTTGCAGGATGATTTCATGGGTGGAGCTGAGATCATTAAATCTGACCCTGTTGTGTCATTCAGGGAGACTGTCCTGGAGAGATCATGCCGCACTGTGATGAGCAAATCACCCAACAAGCACAATCGTCTGTACATGGAAGCAAGACCATTGGAGGAGGGTCTTGCCGAGGCCATTGACGATGGCAAGATTGGACCAAGGGATGACCCCAAGATTCGCTCCAAGATCTTGTCAGAAGAGTTTGGTTGGGACAAGGATCTCGCCAAGAAAATCTGGTGCTTTGGCCCTGAGACCCTTGGACCCAACATGGTGGTTGATATGTGTAAGGGAGTCCAGTATTTGAATGAAATCAAGGATTCTGTGGTTGCTGGATTCCAGTGGGCATCAAAAGAAGGTGCTTTGGCCGAAGAAAACATGAGAGCCATTTGCTTTGAAGTATGTGATGTTGTTCTGCACGCTGATGCTATCCACAGAGGAGGTGGTCAAATCATCCCTACTGCCAGGAGAGTCTTCTATGCTTCCCAGATTACTGCCAAACCCAGGCTTCTTGAGCCTGTCTACCTGGTTGAAATCCAGGCTCCTGAGCAAGCTCTTGGTGGAATCTACAGTGTTCTTAACCAGAAACGTGGACATGTGTTCGAGGAAATGCAGAGGCCTGGTACCCCACTTTACAACATCAAAGCATACCTCCCTGTCATTGAGTCCTTTGGTTTCTCGAGCACATTGAGGGCTGCAACATCAGGCCAGGCTTTCCCACAATGTGTCTTTGATCACTGGGATATGATGTCTTCTGACCCATTGGAGGCTGGATCACAAGCTGCACAGCTTGTCACCGACATCCGCAAGAGGAAGGGCTTGAAGGAACAGATGACTCCTCTCTCCGAGTTTGAAGACAAGCTTTAA
Predicted protein sequences of Glyma15g40860
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma15g40860.1 sequence type=predicted peptide gene model=Glyma15g40860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MVKFTAEELRRIMDYKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDEALKSFKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCVEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDEGKMMERLWGENFFDPATKKWSSKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPASSALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYASAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGRVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKRQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLERSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGKIGPRDDPKIRSKILSEEFGWDKDLAKKIWCFGPETLGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRAICFEVCDVVLHADAIHRGGGQIIPTARRVFYASQITAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEAGSQAAQLVTDIRKRKGLKEQMTPLSEFEDKL*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
