Glyma15g40820 - SoyBase

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Report for Sequence Feature Glyma15g40820

Feature Type:	gene_model
Chromosome:	Gm15
Start:	47815276
stop:	47820329
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g40820

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G16590	AT	Annotation by Michelle Graham. TAIR10: DNA-binding HORMA family protein \| chr1:5673886-5674890 FORWARD LENGTH=215	SoyBase	E_val: 8.00E-98	ISS
GO:0006974	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to DNA damage stimulus	SoyBase	N/A	ISS
GO:0007094	GO-bp	Annotation by Michelle Graham. GO Biological Process: mitotic cell cycle spindle assembly checkpoint	SoyBase	N/A	ISS
GO:0010224	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to UV-B	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
KOG3186	KOG	Mitotic spindle checkpoint protein	JGI		ISS
PTHR11842	Panther	MITOTIC SPINDLE ASSEMBLY CHECKPOINT PROTEIN MAD2	JGI		ISS
PTHR11842:SF10	Panther	MITOTIC SPINDLE ASSEMBLY CHECKPOINT PROTEIN MAD2B	JGI		ISS
PF02301	PFAM	HORMA domain	JGI		ISS
UniRef100_G7IH36	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Mitotic spindle assembly checkpoint protein MAD2B n=1 Tax=Medicago truncatula RepID=G7IH36_MEDTR	SoyBase	E_val: 3.00E-127	ISS
UniRef100_I1MJ80	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MJ80_SOYBN	SoyBase	E_val: 3.00E-151	ISS

Expression Patterns of Glyma15g40820

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g40820

Paralog	Evidence	Comments
Glyma08g18141	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g40820 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g256600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g40820

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g40820

Limit To All Plant Sequences

>Glyma15g40820.2   sequence type=transcript   gene model=Glyma15g40820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGAGTTACTATGATTCTGTGTGTAAATTTGCAGACCAAATAGCTAGGATTCTGGTTGAATTTTTGGAGGTGGCTATTACTGCTGTTGTTTTTCTCAAAGGAGTTTATCCTTCTGGTGCCTTTGAGCGGAGAAGGTATATGAATGTGGTGGTTCAAACGGCTAGCCATCCTCAGCTTAGATATTACATACATGCCACTGTTTCAGGGCTTCTACCCTTTATACAAAAGGGAATGGTGGAGAGAGTAGCTGTTATTTTCTTCAATGCTGACAATGTTCCACTGGAGAAATTTGTATTCAAGCTTGCAATGAACCAAACTTATAGTTCAGAGGTGGAAGAGGTTGATCTTGAGTTCTCTCTCAGATCATTTCTCATCAAACTGTCAAACTCAGAATCTCTTTCTAAAGGGCTTCCTCCTGATTGCTGGTGGGAGATAACTGGTTACTTTCGATCCCTTCCTGAGACTGGTACAAGCAAGGAAGCAGACTTGTGGATCCCTACTGACACAAAACAATGGCAGCAGCCTCCACTTATAACCCCTATCAAGTCAATGAGTAGTGAACCTCTGTGTTTACAATTGTACTTGGAGCATCCATGTTTATCAGAATCATTGCTTTGAGAAGGGAACTCAAAGCCGCAGTACATATTATACATGTATGGTAAGAATGTAGGAACCTTTTTTTATCATAATTTTGAAATCTCAATGTGATTTTGTTATTTCATTATGTTTTTGGTTCATTAGATAATCAGCATACTTTTACTGAAAATTGCTGTCATGTTTTACACTAACCAATTAACAGTTACAGCTT

>Glyma15g40820.4   sequence type=transcript   gene model=Glyma15g40820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAGCCATTTCACGCGTCAATGGAAAATCAAAATCTCGTAGTTGGTGGCAGTGACAGAGTCAAGGAGGAGAATTTTACAAAAGAAGAAAGAAACGAAGAGTCGGGTCATAAAACGACCCGTTGAGAGGCTATGTGATCCGAATTAAATTCGGGTCGGGTCAGTGGCAATTTTATATTTTTGATAGCTTTCACGGTCTTTCCGGGAAAAGGGGTTGTTTGTTTCCTTCAATTGGAGTGTGTTGGGGAACTGAATTTGAATGTGGAGAAATGAAGATGATGGAGCGAAGACAGAATCGAACTCCACAAGACCAAATAGCTAGGATTCTGGTTGAATTTTTGGAGGTGGCTATTACTGCTGTTGTTTTTCTCAAAGGAGTTTATCCTTCTGGTGCCTTTGAGCGGAGAAGGTATATGAATGTGGTGGTTCAAACGGCTAGCCATCCTCAGCTTAGATATTACATACATGCCACTGTTTCAGGGCTTCTACCCTTTATACAAAAGGGAATGGTGGAGAGAGTAGCTGTTATTTTCTTCAATGCTGACAATGTTCCACTGGAGAAATTTGTATTCAAGCTTGCAATGAACCAAACTTATAGTTCAGAGGTGGAAGAGGTTGATCTTGAGTTCTCTCTCAGATCATTTCTCATCAAACTGTCAAACTCAGAATCTCTTTCTAAAGGGCTTCCTCCTGATTGCTGGTGGGAGATAACTGGTTACTTTCGATCCCTTCCTGAGACTGGTACAAGCAAGGAAGCAGACTTGTGGATCCCTACTGACACAAAACAATGGCAGCAGCCTCCACTTATAACCCCTATCAAGTCAATGAGTAGTGAACCTCTGTGTTTACAATTGTACTTGGAGCATCCATGTTTATCAGAATCATTGCTTTGAGAAGGGAACTCAAAGCCGCAGTACATATTATACATGTATGAGTTCTCAATACAGAATGTGATCCATGGGCCAGCCATTAAGGTCATTTTGACAGGAGCATGTAACAGAACAGCCTGTATAAACAAAACAAGATTTTCAAGCTACTTTTGAATGGATTCCACTGTTTATGCACATTCTGAAGCTACTTTTGATCCAACAGAAATATCGCATTTTCTCTATACGCATGCAATGGTCATGTTTTGTTGCTAGTGGTTCGAAAGCATGTTCGCAATCTCTGGAATATTAAAAGAACTATTTACAAGCACTAGTGGTCTGGATTGAACTCTTCCCAAATGAAAAATTGCTTACTTTTTTATGTGATTTTGGAGGTGGGGAAGATAGAGAGGATTATAGTATTGTATTCTATGGATGGACAATGTAAAAGCATCATGATTAATGGTATCTGTTTTTATTGGTCCAAATGGTGTGGGTTGAACATGCTGTAGAGCTTACTTACTTTGGACTTCATTGCTACATCTTTTCCTCCAATTGGCCTTAGCTACCTCAGCCACTTTTACTTGCTTATAATGGTTGACATTATTGCACCATTTTCTCTCATTTTCGAGGATTTCTTTTGGTCTGCTGACTTGCTCAACCATCAAATCTTTTGATCATAGTAGTCTTCTTTAGTTCCTTCCCCTATTAATTCAAGTGGGGGAATCCATGACCATGGCAAACACTATTCAATGTACTATTCTTTAGTCTTTACCATAATCAAAAGATTGGTATGGTTTCCTAACATTGAACCTGCTACATCAAAGAAATTATTATATAATTCAAGAATATCATGGTTTCAA

>Glyma15g40820.5   sequence type=transcript   gene model=Glyma15g40820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAGCCATTTCACGCGTCAATGGAAAATCAAAATCTCGTAGTTGGTGGCAGTGACAGAGTCAAGGAGGAGAATTTTACAAAAGAAGAAAGAAACGAAGAGTCGGGTCATAAAACGACCCGTTGAGAGGCTATGTGATCCGAATTAAATTCGGGTCGGGTCAGTGGCAATTTTATATTTTTGATAGCTTTCACGGTCTTTCCGGGAAAAGGGGTTGTTTGTTTCCTTCAATTGGAGTGTGTTGGGGAACTGAATTTGAATGTGGAGAAATGAAGATGATGGAGCGAAGACAGAATCGAACTCCACAAGACCAAATAGCTAGGATTCTGGTTGAATTTTTGGAGGTGGCTATTACTGCTGTTGTTTTTCTCAAAGGAGTTTATCCTTCTGGTGCCTTTGAGCGGAGAAGGTATATGAATGTGGTGGTTCAAACGGCTAGCCATCCTCAGCTTAGATATTACATACATGCCACTGTTTCAGGGCTTCTACCCTTTATACAAAAGGGAATGGTGGAGAGAGTAGCTGTTATTTTCTTCAATGCTGACAATGTTCCACTGGAGAAATTTGTATTCAAGCTTGCAATGAACCAAACTTATAGTTCAGAGGTGGAAGAGGTTGATCTTGAGTTCTCTCTCAGATCATTTCTCATCAAACTGTCAAACTCAGAATCTCTTTCTAAAGGGCTTCCTCCTGATTGCTGGTGGGAGATAACTGGTTACTTTCGATCCCTTCCTGAGACTGGTACAAGCAAGGAAGCAGACTTGTGGATCCCTACTGACACAAAACAATGGCAGCAGCCTCCACTTATAACCCCTATCAAGTCAATGAGTAGTGAACCTCTGTGTTTACAATTGTACTTGGAGCATCCATGTTTATCAGAATCATTGCTTTGAGAAGGGAACTCAAAGCCGCAGTACATATTATACATGTATGAAATATCGCATTTTCTCTATACGCATGCAATGGTCATGTTTTGTTGCTAGTGGTTCGAAAGCATGTTCGCAATCTCTGGAATATTAAAAGAACTATTTACAAGCACTAGTGGTCTGGATTGAACTCTTCCCAAATGAAAAATTGCTTACTTTTTTATGTGATTTTGGAGGTGGGGAAGATAGAGAGGATTATAGTATTGTATTCTATGGATGGACAATGTAAAAGCATCATGATTAATGGTATCTGTTTTTATTGGTCCAAATGGTGTGGGTTGAACATGCTGTAGAGCTTACTTACTTTGGACTTCATTGCTACATCTTTTCCTCCAATTGGCCTTAGCTACCTCAGCCACTTTTACTTGCTTATAATGGTTGACATTATTGCACCATTTTCTCTCATTTTCGAGGATTTCTTTTGGTCTGCTGACTTGCTCAACCATCAAATCTTTTGATCATAGTAGTCTTCTTTAGTTCCTTCCCCTATTAATTCAAGTGGGGGAATCCATGACCATGGCAAACACTATTCAATGTACTATTCTTTAGTCTTTACCATAATCAAAAGATTGGTATGGTTTCCTAACATTGAACCTGCTACATCAAAGAAATTATTATATAATTCAAGAATATCATGGTTTCAA

Coding sequences of Glyma15g40820

Limit To All Plant Sequences

>Glyma15g40820.1   sequence type=CDS   gene model=Glyma15g40820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGATGATGGAGCGAAGACAGAATCGAACTCCACAAGACCAAATAGCTAGGATTCTGGTTGAATTTTTGGAGGTGGCTATTACTGCTGTTGTTTTTCTCAAAGGAGTTTATCCTTCTGGTGCCTTTGAGCGGAGAAGGTATATGAATGTGGTGGTTCAAACGGCTAGCCATCCTCAGCTTAGATATTACATACATGCCACTGTTTCAGGGCTTCTACCCTTTATACAAAAGGGAATGGTGGAGAGAGTAGCTGTTATTTTCTTCAATGCTGACAATGTTCCACTGGAGAAATTTGTATTCAAGCTTGCAATGAACCAAACTTATAGTTCAGAGGTGGAAGAGGTTGATCTTGAGTTCTCTCTCAGATCATTTCTCATCAAACTGTCAAACTCAGAATCTCTTTCTAAAGGGCTTCCTCCTGATTGCTGGTGGGAGATAACTGGTTACTTTCGATCCCTTCCTGAGACTGGTACAAGCAAGGAAGCAGACTTGTGGATCCCTACTGACACAAAACAATGGCAGCAGCCTCCACTTATAACCCCTATCAAGTCAATGAGTAGTGAACCTCTGTGTTTACAATTGTACTTGGAGCATCCATGTTTATCAGAATCATTGCTTTGA

>Glyma15g40820.2   sequence type=CDS   gene model=Glyma15g40820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATGTGGTGGTTCAAACGGCTAGCCATCCTCAGCTTAGATATTACATACATGCCACTGTTTCAGGGCTTCTACCCTTTATACAAAAGGGAATGGTGGAGAGAGTAGCTGTTATTTTCTTCAATGCTGACAATGTTCCACTGGAGAAATTTGTATTCAAGCTTGCAATGAACCAAACTTATAGTTCAGAGGTGGAAGAGGTTGATCTTGAGTTCTCTCTCAGATCATTTCTCATCAAACTGTCAAACTCAGAATCTCTTTCTAAAGGGCTTCCTCCTGATTGCTGGTGGGAGATAACTGGTTACTTTCGATCCCTTCCTGAGACTGGTACAAGCAAGGAAGCAGACTTGTGGATCCCTACTGACACAAAACAATGGCAGCAGCCTCCACTTATAACCCCTATCAAGTCAATGAGTAGTGAACCTCTGTGTTTACAATTGTACTTGGAGCATCCATGTTTATCAGAATCATTGCTTTGA

>Glyma15g40820.4   sequence type=CDS   gene model=Glyma15g40820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGATGATGGAGCGAAGACAGAATCGAACTCCACAAGACCAAATAGCTAGGATTCTGGTTGAATTTTTGGAGGTGGCTATTACTGCTGTTGTTTTTCTCAAAGGAGTTTATCCTTCTGGTGCCTTTGAGCGGAGAAGGTATATGAATGTGGTGGTTCAAACGGCTAGCCATCCTCAGCTTAGATATTACATACATGCCACTGTTTCAGGGCTTCTACCCTTTATACAAAAGGGAATGGTGGAGAGAGTAGCTGTTATTTTCTTCAATGCTGACAATGTTCCACTGGAGAAATTTGTATTCAAGCTTGCAATGAACCAAACTTATAGTTCAGAGGTGGAAGAGGTTGATCTTGAGTTCTCTCTCAGATCATTTCTCATCAAACTGTCAAACTCAGAATCTCTTTCTAAAGGGCTTCCTCCTGATTGCTGGTGGGAGATAACTGGTTACTTTCGATCCCTTCCTGAGACTGGTACAAGCAAGGAAGCAGACTTGTGGATCCCTACTGACACAAAACAATGGCAGCAGCCTCCACTTATAACCCCTATCAAGTCAATGAGTAGTGAACCTCTGTGTTTACAATTGTACTTGGAGCATCCATGTTTATCAGAATCATTGCTTTGA

>Glyma15g40820.5   sequence type=CDS   gene model=Glyma15g40820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGATGATGGAGCGAAGACAGAATCGAACTCCACAAGACCAAATAGCTAGGATTCTGGTTGAATTTTTGGAGGTGGCTATTACTGCTGTTGTTTTTCTCAAAGGAGTTTATCCTTCTGGTGCCTTTGAGCGGAGAAGGTATATGAATGTGGTGGTTCAAACGGCTAGCCATCCTCAGCTTAGATATTACATACATGCCACTGTTTCAGGGCTTCTACCCTTTATACAAAAGGGAATGGTGGAGAGAGTAGCTGTTATTTTCTTCAATGCTGACAATGTTCCACTGGAGAAATTTGTATTCAAGCTTGCAATGAACCAAACTTATAGTTCAGAGGTGGAAGAGGTTGATCTTGAGTTCTCTCTCAGATCATTTCTCATCAAACTGTCAAACTCAGAATCTCTTTCTAAAGGGCTTCCTCCTGATTGCTGGTGGGAGATAACTGGTTACTTTCGATCCCTTCCTGAGACTGGTACAAGCAAGGAAGCAGACTTGTGGATCCCTACTGACACAAAACAATGGCAGCAGCCTCCACTTATAACCCCTATCAAGTCAATGAGTAGTGAACCTCTGTGTTTACAATTGTACTTGGAGCATCCATGTTTATCAGAATCATTGCTTTGA

Predicted protein sequences of Glyma15g40820

Limit To All Plant Sequences

>Glyma15g40820.1   sequence type=predicted peptide   gene model=Glyma15g40820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKMMERRQNRTPQDQIARILVEFLEVAITAVVFLKGVYPSGAFERRRYMNVVVQTASHPQLRYYIHATVSGLLPFIQKGMVERVAVIFFNADNVPLEKFVFKLAMNQTYSSEVEEVDLEFSLRSFLIKLSNSESLSKGLPPDCWWEITGYFRSLPETGTSKEADLWIPTDTKQWQQPPLITPIKSMSSEPLCLQLYLEHPCLSESLL*

>Glyma15g40820.2   sequence type=predicted peptide   gene model=Glyma15g40820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNVVVQTASHPQLRYYIHATVSGLLPFIQKGMVERVAVIFFNADNVPLEKFVFKLAMNQTYSSEVEEVDLEFSLRSFLIKLSNSESLSKGLPPDCWWEITGYFRSLPETGTSKEADLWIPTDTKQWQQPPLITPIKSMSSEPLCLQLYLEHPCLSESLL*

>Glyma15g40820.4   sequence type=predicted peptide   gene model=Glyma15g40820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKMMERRQNRTPQDQIARILVEFLEVAITAVVFLKGVYPSGAFERRRYMNVVVQTASHPQLRYYIHATVSGLLPFIQKGMVERVAVIFFNADNVPLEKFVFKLAMNQTYSSEVEEVDLEFSLRSFLIKLSNSESLSKGLPPDCWWEITGYFRSLPETGTSKEADLWIPTDTKQWQQPPLITPIKSMSSEPLCLQLYLEHPCLSESLL*

>Glyma15g40820.5   sequence type=predicted peptide   gene model=Glyma15g40820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKMMERRQNRTPQDQIARILVEFLEVAITAVVFLKGVYPSGAFERRRYMNVVVQTASHPQLRYYIHATVSGLLPFIQKGMVERVAVIFFNADNVPLEKFVFKLAMNQTYSSEVEEVDLEFSLRSFLIKLSNSESLSKGLPPDCWWEITGYFRSLPETGTSKEADLWIPTDTKQWQQPPLITPIKSMSSEPLCLQLYLEHPCLSESLL*

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