Glyma15g40810 - SoyBase

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Report for Sequence Feature Glyma15g40810

Feature Type:	gene_model
Chromosome:	Gm15
Start:	47793145
stop:	47795008
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g40810

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G12920	AT	Annotation by Michelle Graham. TAIR10: SBP (S-ribonuclease binding protein) family protein \| chr3:4122127-4123323 REVERSE LENGTH=335	SoyBase	E_val: 2.00E-84	ISS
GO:0043067	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of programmed cell death	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG1100	KOG	Predicted E3 ubiquitin ligase	JGI		ISS
PTHR10044	Panther	INHIBITOR OF APOPTOSIS	JGI		ISS
PTHR10044:SF81	Panther	SUBFAMILY NOT NAMED	JGI		ISS
UniRef100_G7IH38	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: S-RNase binding protein n=1 Tax=Medicago truncatula RepID=G7IH38_MEDTR	SoyBase	E_val: 5.00E-114	ISS
UniRef100_I1MJ79	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MJ79_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g40810

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g40810

Paralog	Evidence	Comments
Glyma08g18150	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g40810 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g256500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g40810

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g40810

Limit To All Plant Sequences

>Glyma15g40810.1   sequence type=CDS   gene model=Glyma15g40810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGTTGAAGCGCGCCATCTCAATCTCTTCCCTTCTCAACTCATCACCAACCGGCAAGTGATGGATTCTGGTGAGGCGAATATGATGAACATGTACAACAACAGCACTCCGATTGGTGGTTACTCTTCGTTTCTGCCGTTATCCGGCGCCGTCACGGAGACGGCGCTTCCGTCCTCGGTTTTCAACCATTCTCTCGCCAACGCCGTCAAATCCGAAAGCGGCGTTACCTACAACAACAACAACAACAACAACAACGTTTCTGTTTCTCCCATGTCGAGAAAGCGTTCCCGAGATAATAACAACAATTACGGTTACAACAACAACAACAACGATTCATTTTCGTTTCTCGGCCAAGACGTTTCTCTCCAGATCCAGCAGCAGCAACTCGACATCGAGCATTTAATCATGCAACGCATGGAGAAGGTGAGAATGGAGATTGATGAGAAGAGGAAGAGGCAAGCGAGGAGGATCATTGAAGCGATTGAGGTTGGAGTGATGAAGAAGCTGAAGACGAAGGAAGAGGAGATAGAGAAAATCGGAAAACTGAATTGGGCGTTGGAAGAGAAAGTGAAGCATCTCTGCATGGAGAATCAGGTGTGGCGTAACATAGCGGAAACCAACGAAGCCACAGCGAATGCTCTGCGGTGTAATTTAGAGCAGGTTCTCGCGCAGCGCGGCGGAATGGCGGCGGAGGAAGACGTCGGCGGAGGCGCCACCGTGTGCGGCGGCGCGGAGATGGACGACGCCGAGTCCTGCTGCGGGAGCACCGAGGAGGACGGTTTAGAAAAGGAAACGGGGGGTTGGCGCACGTTAGCGGGGTGCGCAGGGGTGAAGGATAAGGAGGGTGGTGGTAATGGGAGGTTGTGCAGGAACTGTAGGAAGGAAGAGTCTTGTGTGCTGATTTTGCCGTGCCGTCATTTGTGCTTGTGTACTGTGTGTGGGTCTTCACTCCACATTTGTCCCATTTGTAAATCCTATAAGACTGCTAGTGTGCATGTTAACATGTCCTAA

Predicted protein sequences of Glyma15g40810

Limit To All Plant Sequences

>Glyma15g40810.1   sequence type=predicted peptide   gene model=Glyma15g40810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVEARHLNLFPSQLITNRQVMDSGEANMMNMYNNSTPIGGYSSFLPLSGAVTETALPSSVFNHSLANAVKSESGVTYNNNNNNNNVSVSPMSRKRSRDNNNNYGYNNNNNDSFSFLGQDVSLQIQQQQLDIEHLIMQRMEKVRMEIDEKRKRQARRIIEAIEVGVMKKLKTKEEEIEKIGKLNWALEEKVKHLCMENQVWRNIAETNEATANALRCNLEQVLAQRGGMAAEEDVGGGATVCGGAEMDDAESCCGSTEEDGLEKETGGWRTLAGCAGVKDKEGGGNGRLCRNCRKEESCVLILPCRHLCLCTVCGSSLHICPICKSYKTASVHVNMS*

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