Glyma15g40750 - SoyBase

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Report for Sequence Feature Glyma15g40750

Feature Type:	gene_model
Chromosome:	Gm15
Start:	47728965
stop:	47735651
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g40750

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G04170	AT	Annotation by Michelle Graham. TAIR10: eukaryotic translation initiation factor 2 gamma subunit \| chr1:1097423-1099702 FORWARD LENGTH=465	SoyBase	E_val: 0	ISS
GO:0009220	GO-bp	Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide biosynthetic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0003743	GO-mf	Annotation by Michelle Graham. GO Molecular Function: translation initiation factor activity	SoyBase	N/A	ISS
GO:0003924	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTPase activity	SoyBase	N/A	ISS
GO:0005525	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTP binding	SoyBase	N/A	ISS
GO:0008135	GO-mf	Annotation by Michelle Graham. GO Molecular Function: translation factor activity, nucleic acid binding	SoyBase	N/A	ISS
KOG0466	KOG	Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase)	JGI		ISS
PTHR23115	Panther	TRANSLATION FACTOR	JGI		ISS
PTHR23115:SF9	Panther	EUKARYOTIC TRANSLATION INITIATION FACTOR 2 GAMMA SUBUNIT (EIF-2- GAMMA)	JGI		ISS
PF00009	PFAM	Elongation factor Tu GTP binding domain	JGI		ISS
PF03144	PFAM	Elongation factor Tu domain 2	JGI		ISS
PF09173	PFAM	Initiation factor eIF2 gamma, C terminal	JGI		ISS
UniRef100_C6TAN4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TAN4_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_G7IJ99	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Eukaryotic translation initiation factor 2 subunit n=1 Tax=Medicago truncatula RepID=G7IJ99_MEDTR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g40750

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g40750

Paralog	Evidence	Comments
Glyma08g18240	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g40750 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g255900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g40750

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g40750

Limit To All Plant Sequences

>Glyma15g40750.1   sequence type=CDS   gene model=Glyma15g40750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCACGGAAGGGTTTGATGGAACAAGACCTGAGTAAGTTGGATGTGACAAAGTTGCATCCACTTTCTCCAGAAGTCATATCTCGGCAGGCTACTATTAATATTGGCACTATAGGTCATGTGGCACATGGCAAGTCGACAGTTGTGAAAGCAATATCAGGAGTCCAGACTGTGCGTTTCAAAAATGAGTTGGAGCGTAACATTACAATCAAGCTTGGCTATGCTAATGCAAAAATATACAAGTGTGAAGATGAACGGTGTCCAAGGCCTATGTGCTACAAGGCTTATGGAAGTGGAAAGGAAGATAGTCCTATGTGTGATGTGCCAGGATTTGAAAACAGCAAGATGAAATTGCTGAGACATGTTTCATTTGTGGATTGTCCGGGACATGATATTCTTATGGCTACAATGCTTAATGGAGCAGCAATCATGGATGGAGCTTTGCTACTCATTGCTGCCAATGAAAGCTGCCCACAACCACAAACCTCTGAGCATTTAGCTGCTGTGGAAATTATGCGTCTACAGCACATAATAATTCTTCAGAACAAGGTAGACTTGATTCAAGAAAATGTGGCTATCAATCAGCATGAGGCAATTTCAAAGTTTATACAAGGAACTGTTGCTGATGGTGCACCAGTAGTACCTATTTCAGCACAGTTGAAGTATAATATTGATGTTGTGTGTGAGTATATTGTGAAGAAGATCCCAATCCCTGAAAGGAACTTTGTTTCTCCTCCTAATATGATCGTTATTCGGTCATTTGATGTCAATAAACCTGGTTATGAGGTTGATGAAATAAAAGGAGGTGTAGCTGGTGGGAGCATTTTGAGGGGTGTTTTGAAGGTCAATCAATTCATTGAAGTTCGTCCTGGGATTGTTGTTAAAGATGAGAGTGGAAATATCAGATGCACGCCCATATACTCAAGAATAGTTTCATTGTATGCTGAACAAAATGAGCTTCAATTTGCTGTTCCTGGAGGCCTAATTGGTGTTGGGACAACAATGGATCCCACTTTGACACGTGCTGATAGGTTGGTAGGTCAAGTTTTGGGAGAGGTTGGATCACTACCTGAGGTTTTTGTTGAACTTGAGGTAAACTTTTTCCTGCTTCGGCGGCTCCTTGGTGTCCGAACAAAAGGGTCTGAGAGACAGGGAAAGGTATCCAAGCTGGCTAAAGGAGAGATGTTAATGTTGAACATTGGATCAATGTCGACGGGGGCTAGAGTAGTTGCTGTGAAGAATGACTTGGCGAAGTTGCAACTCACTTCCCCTGTGTGCACTAGCAAGGGCGAGAAGATTGCACTTAGTCGTCGTGTTGAGAAGCATTGGCGTCTTATTGGGTGGGGACAAATCCAAGCTGGAATCACTCTTGATGTCCCTCCCGCCCCCCAACTGAGTTGA

Predicted protein sequences of Glyma15g40750

Limit To All Plant Sequences

>Glyma15g40750.1   sequence type=predicted peptide   gene model=Glyma15g40750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSRKGLMEQDLSKLDVTKLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDERCPRPMCYKAYGSGKEDSPMCDVPGFENSKMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAISKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPIPERNFVSPPNMIVIRSFDVNKPGYEVDEIKGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIRCTPIYSRIVSLYAEQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPEVFVELEVNFFLLRRLLGVRTKGSERQGKVSKLAKGEMLMLNIGSMSTGARVVAVKNDLAKLQLTSPVCTSKGEKIALSRRVEKHWRLIGWGQIQAGITLDVPPAPQLS*

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