Glyma15g40740 - SoyBase

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Report for Sequence Feature Glyma15g40740

Feature Type:	gene_model
Chromosome:	Gm15
Start:	47715638
stop:	47720661
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g40740

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G12930	AT	Annotation by Michelle Graham. TAIR10: Lojap-related protein \| chr3:4128465-4129616 FORWARD LENGTH=238	SoyBase	E_val: 1.00E-93	ISS
GO:0006655	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphatidylglycerol biosynthetic process	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009073	GO-bp	Annotation by Michelle Graham. GO Biological Process: aromatic amino acid family biosynthetic process	SoyBase	N/A	ISS
GO:0010103	GO-bp	Annotation by Michelle Graham. GO Biological Process: stomatal complex morphogenesis	SoyBase	N/A	ISS
GO:0016226	GO-bp	Annotation by Michelle Graham. GO Biological Process: iron-sulfur cluster assembly	SoyBase	N/A	ISS
GO:0019288	GO-bp	Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway	SoyBase	N/A	ISS
GO:0045036	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to chloroplast	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
PTHR21043	Panther	IOJAP SUPERFAMILY ORTHOLOG	JGI		ISS
PF02410	PFAM	Domain of unknown function DUF143	JGI		ISS
UniRef100_G7IJA0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: IojAP protein-like protein n=1 Tax=Medicago truncatula RepID=G7IJA0_MEDTR	SoyBase	E_val: 2.00E-130	ISS
UniRef100_I1MJ71	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MJ71_SOYBN	SoyBase	E_val: 1.00E-174	ISS

Expression Patterns of Glyma15g40740

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g40740

Paralog	Evidence	Comments
Glyma08g18330	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g40740 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g255800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g40740

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g40740

Limit To All Plant Sequences

>Glyma15g40740.2   sequence type=transcript   gene model=Glyma15g40740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACAAAGCAGGGTATTCCCTTTAAATAAAATAAAATAAAATTCAAATAAAGTCACTCAAAGACTCATTTTATCTTATAAAAATCTAGTGTAAAATGAGAGTAACATAAAATGAATGAAATTAGTCAAATTACAATAATATCGCGAGACCCGTTTGCCTTTCCCATTTCATTTCCAAATCTTTTTGTTTCGTAAATATCTCTTTTTGCCGCGACAAATGCTACCATCATCCACTGTCCTGTCTCTCGCCGGAACCGGCGCCGGCGTTCCGGTGAGCTTTTCCGGCAAACTGGGTCACCTCGAAACCAAGTTTTCTCCAAGACCCAGAAAGGTTTTCAGCCGTTCGTGCATAAAGGGGCTTCCTTTACAACAAAACACCGTCAATGGTTTAAAATCGAAGAAGAGAAACACACATTCGAGCTTCGCGTTGGGTAAAAATGCCGAAGACAGCTTTTTATCGGATGTAAATGGAGACACCGATGAGATGTACGATGAATTAATTAATAATTATGGAAAAGTGGTATTTAGTAGAAAAGACAAAAAGCCTGCTAGCGCAGAGATTGACGATGATGCTGAAAGCCTGTCATTTGCTGTGGAATTGGCCACGGTTGCAAGTGAGGTTAAGGCAGGAGATATAAAGGTCTTATTTGTGAAGCCACTTGTTTACTGGACTCGATTTTTTATCATAGCTACAGCATTTTCTCGTCCCCAGATTGATGCTATCGGGTATGGCCTTTGCCATTGATCTATTTATATTTAGCAGGT

Coding sequences of Glyma15g40740

Limit To All Plant Sequences

>Glyma15g40740.1   sequence type=CDS   gene model=Glyma15g40740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTACCATCATCCACTGTCCTGTCTCTCGCCGGAACCGGCGCCGGCGTTCCGGTGAGCTTTTCCGGCAAACTGGGTCACCTCGAAACCAAGTTTTCTCCAAGACCCAGAAAGGTTTTCAGCCGTTCGTGCATAAAGGGGCTTCCTTTACAACAAAACACCGTCAATGGTTTAAAATCGAAGAAGAGAAACACACATTCGAGCTTCGCGTTGGGTAAAAATGCCGAAGACAGCTTTTTATCGGATGTAAATGGAGACACCGATGAGATGTACGATGAATTAATTAATAATTATGGAAAAGTGGTATTTAGTAGAAAAGACAAAAAGCCTGCTAGCGCAGAGATTGACGATGATGCTGAAAGCCTGTCATTTGCTGTGGAATTGGCCACGGTTGCAAGTGAGGTTAAGGCAGGAGATATAAAGGTCTTATTTGTGAAGCCACTTGTTTACTGGACTCGATTTTTTATCATAGCTACAGCATTTTCTCGTCCCCAGATTGATGCTATCGGGTCCAGAATTAGAGATCGAGCTGAGAAGAAATATGGAAAAATTCCAACCGGAGACACAAAACCCAACTCATGGACTCTGTTGGACTTCGGTGATGTTGTTGTCCACATCTTCCTTCCCTCACAGAGAGCTTTCTACAATTTGGAAGAATTTTATGGTAATGCAACACCAGTAGAGCTGCCTTTTGAAAATCAACCACCACCATTTCGCATTTGA

>Glyma15g40740.2   sequence type=CDS   gene model=Glyma15g40740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTACCATCATCCACTGTCCTGTCTCTCGCCGGAACCGGCGCCGGCGTTCCGGTGAGCTTTTCCGGCAAACTGGGTCACCTCGAAACCAAGTTTTCTCCAAGACCCAGAAAGGTTTTCAGCCGTTCGTGCATAAAGGGGCTTCCTTTACAACAAAACACCGTCAATGGTTTAAAATCGAAGAAGAGAAACACACATTCGAGCTTCGCGTTGGGTAAAAATGCCGAAGACAGCTTTTTATCGGATGTAAATGGAGACACCGATGAGATGTACGATGAATTAATTAATAATTATGGAAAAGTGGTATTTAGTAGAAAAGACAAAAAGCCTGCTAGCGCAGAGATTGACGATGATGCTGAAAGCCTGTCATTTGCTGTGGAATTGGCCACGGTTGCAAGTGAGGTTAAGGCAGGAGATATAAAGGTCTTATTTGTGAAGCCACTTGTTTACTGGACTCGATTTTTTATCATAGCTACAGCATTTTCTCGTCCCCAGATTGATGCTATCGGGTATGGCCTTTGCCATTGA

Predicted protein sequences of Glyma15g40740

Limit To All Plant Sequences

>Glyma15g40740.1   sequence type=predicted peptide   gene model=Glyma15g40740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLPSSTVLSLAGTGAGVPVSFSGKLGHLETKFSPRPRKVFSRSCIKGLPLQQNTVNGLKSKKRNTHSSFALGKNAEDSFLSDVNGDTDEMYDELINNYGKVVFSRKDKKPASAEIDDDAESLSFAVELATVASEVKAGDIKVLFVKPLVYWTRFFIIATAFSRPQIDAIGSRIRDRAEKKYGKIPTGDTKPNSWTLLDFGDVVVHIFLPSQRAFYNLEEFYGNATPVELPFENQPPPFRI*

>Glyma15g40740.2   sequence type=predicted peptide   gene model=Glyma15g40740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLPSSTVLSLAGTGAGVPVSFSGKLGHLETKFSPRPRKVFSRSCIKGLPLQQNTVNGLKSKKRNTHSSFALGKNAEDSFLSDVNGDTDEMYDELINNYGKVVFSRKDKKPASAEIDDDAESLSFAVELATVASEVKAGDIKVLFVKPLVYWTRFFIIATAFSRPQIDAIGYGLCH*

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