Glyma15g40670 - SoyBase

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Report for Sequence Feature Glyma15g40670

Feature Type:	gene_model
Chromosome:	Gm15
Start:	47642739
stop:	47650130
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g40670

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G79090	AT	Annotation by Michelle Graham. TAIR10: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Topoisomerase II-associated protein PAT1 (InterPro:IPR019167); BEST Arabidopsis thaliana protein match is: Topoisomerase II-associated protein PAT1 (TAIR:AT3G22270.1); Has 1260 Blast hits to 1163 proteins in 186 species: Archae - 0; Bacteria - 32; Metazoa - 596; Fungi - 277; Pl	SoyBase	E_val: 0	ISS
GO:0006486	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein glycosylation	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR21551	Panther	TOPOISOMERASE II-ASSOCIATED PROTEIN PAT1	JGI		ISS
PF09770	PFAM	Topoisomerase II-associated protein PAT1	JGI		ISS
UniRef100_I1MJ65	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MJ65_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q0WPK4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT1G79090 protein n=1 Tax=Arabidopsis thaliana RepID=Q0WPK4_ARATH	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g40670

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g40670

Paralog	Evidence	Comments
Glyma08g18270	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g40670 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g255100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g40670

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma15g40670

Limit To All Plant Sequences

>Glyma15g40670.1   sequence type=CDS   gene model=Glyma15g40670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGATATGGATGGGTTTAGAGCTGGGGGTCATGTTGGGGGAACTCCCAACACAGAGGATCTTGGGCAACTGGGAAATGCTCCCACAGAGGGTGCAGTTTTTGATGCATCACAATATGCATTTTTCGGTTCAGACACTGCTGTTCAAGAAGTTGAGTTGGGAGGGTTAGACGATGATGATTTGCTTGAGTCTAATGCGGAGTTCATTCTCAATAGAGAAGAGGCCGAGGATTTAAAATCTCTTTCTGATATTGATGATCTAAGTACTACTTTTTGGAAGTTGAACAAGGTTGTAAGTGAACCAAAAGGCGCAGGATTTATTGGTGAACAGGGATCGAGAGAAAATTCTGCAGTTGAATGGGCACACAAAGATGATGTTCTTAATTGGTATCAACAAAATGCTTATGATAATGAAGGTTCTTTGGATGGCAGAAGAATGTCATCACAACCTCATTCTTCTCTTTCTCAGTTACATGAACCAAAGGCCCTGTACAGAACATCCTCTTATCCTGAGCAGCAAAGGCAGCAACAACATCTCCAGCTCCAACCTAGTGAATCGGCTCCCAACTGGATTGATCAACATTTGTATGGTACGGAAACCACTCAGGATGGCAAACGATGGTCATCAAAACCACATTCCACCATTGCACACTTACCAGAGTCAAGGCCCTTGCATAGAACATCTTTATATCCTGACAAGCAGCAGGAATTTTCTCATCTTTCTAGTGAACCAATTTTGGTACCGAACTCCTCATTTACTTCTTATCCTCCACCTGGTGGTAGATCTCATCAGGCTTCTCCAAGTCAGAATTCAGGCCACTTAAACCTTCCTTATCATGCTACAGGAGCTCAGATGGCATTATCACCACCAAATCGATCTCATTTCCCCAATTCTGCATTACAGTTGAGTGGAATAAACCATGGGCCACCTTTTGGTGGAAACATGCGTCAATTTTCTACTGGTTCCCCTCTTAATCAGATAATTCAGAATCAATTGGTAAACCAGGCAGGGTTATATCCTGGAGATCACCCCAATATTTCATCAGGTATACCCATGATTAACAAATATGATCAGATGCTTGGGCTGATGGAATTGCGGGATCAAATTCCAAAATCAGCTCAATTAGGTAGACAGAATCTCCGGTTTCCCCCACAGGGTTTTGATATGGGTGGCCTGAGAAGCAATAGTGGATGGCCCCGATTTAGGTCGAAGTATATGACTACTGAGGAAATTGAGAATATTCTTAGAATGCAGCTTGTAGCAACACACAGTAATGATCCATATGTTGATGACTATTACCACCAAGGCTGTCTTGCGAAAAAGTCATCTGGTGCTAAATTGAGGCATCACTTTTCTCCAGCTCAAATAAAGGAACTCCCTCTACGACCCTCTTCTAATGCTGAACCACATGCTTTTCTTCAGGTTGATGCACTAGGGAGAGTTCCATTCTCATCAATTCGCAGGCCTCGTCCTCTACTGGAAGTTGATCCTCCCAATTCCTCTCATGCAGGTAGCCCTGAGCAAGGCATTTCAGAGAAACCCCTTGAACAGGAACCAATGCTTGCAGCTAGGGTCACTATTGAAGATGGTATTTATCTTCTTCTTGATGTAGATGATATTGACCGTTTCCTACAGTTTAATCAGCTTCAAGATGGTGGTCTTGTGTTAAAAAGGAAACGGCAAGGTCTTCTGGAAGGACTTGCTGCCTCACTTCAGTTAGTTGATCCACTGGGAAAGAATGGACATACGGTTACACTTGCTGCAAAAGATGACTTTGTTTTTCTCAGGATAGTTTCTCTACCCAAGGGTCGAAAGCTACTTGGTAGGTACCTTCAACTGCTATTTCCTGGTGGTGAGCTCATGCGGACAGTCTGCATGGCCATCTTTCGTCATTTAAGGTTCTTATTTGGTGGCCTTCCCTCCGATCCATCTGCAGCAGAAACTATAAGTAACCTTGCAAGGGTTGTTTCAAGGTGCATTCGTGAAATGGATCTCAGTGCAATAAGTGCTTGTCTAGCAGCAGTTGTTTATACTTCCGAGCCGCCTCCCTTACGTCCCCTTGGAAGTTCTGCTGGAGATGGGGCTTCCCTTATTCTAGTATCTGTGCTTGAGAGGGCAACTGAGCTTCTAACTGATCCTCATGCTGCTAGCAACTACAATATTGCAAATCGTTCGCTTTGGCAGGCTACATTTGATGAGTTCTTTGGCCTTCTGACCAAGTATTGTGTGAACAAATATGATAGTGTCATGCAATCATTCCTTATACAAGGGACACCAAATATGGCTTCCATTGGTTCAGATGTTGCCAGAGCTATTAGTAAGGAAATGCCAGTTGAGCTCCTACGTGCAAGTCTACCTCACACTGATGACCGCCAGAAAAAACAATTACTTGATTTTGCTCAGCGTTCTATACCTATAGTTGGATTTAATAGTAATTCGGGGGGTCAAGGTCACCATGTGAACTCAGAGTCAGTCCTGAGTTAA

Predicted protein sequences of Glyma15g40670

Limit To All Plant Sequences

>Glyma15g40670.1   sequence type=predicted peptide   gene model=Glyma15g40670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVDMDGFRAGGHVGGTPNTEDLGQLGNAPTEGAVFDASQYAFFGSDTAVQEVELGGLDDDDLLESNAEFILNREEAEDLKSLSDIDDLSTTFWKLNKVVSEPKGAGFIGEQGSRENSAVEWAHKDDVLNWYQQNAYDNEGSLDGRRMSSQPHSSLSQLHEPKALYRTSSYPEQQRQQQHLQLQPSESAPNWIDQHLYGTETTQDGKRWSSKPHSTIAHLPESRPLHRTSLYPDKQQEFSHLSSEPILVPNSSFTSYPPPGGRSHQASPSQNSGHLNLPYHATGAQMALSPPNRSHFPNSALQLSGINHGPPFGGNMRQFSTGSPLNQIIQNQLVNQAGLYPGDHPNISSGIPMINKYDQMLGLMELRDQIPKSAQLGRQNLRFPPQGFDMGGLRSNSGWPRFRSKYMTTEEIENILRMQLVATHSNDPYVDDYYHQGCLAKKSSGAKLRHHFSPAQIKELPLRPSSNAEPHAFLQVDALGRVPFSSIRRPRPLLEVDPPNSSHAGSPEQGISEKPLEQEPMLAARVTIEDGIYLLLDVDDIDRFLQFNQLQDGGLVLKRKRQGLLEGLAASLQLVDPLGKNGHTVTLAAKDDFVFLRIVSLPKGRKLLGRYLQLLFPGGELMRTVCMAIFRHLRFLFGGLPSDPSAAETISNLARVVSRCIREMDLSAISACLAAVVYTSEPPPLRPLGSSAGDGASLILVSVLERATELLTDPHAASNYNIANRSLWQATFDEFFGLLTKYCVNKYDSVMQSFLIQGTPNMASIGSDVARAISKEMPVELLRASLPHTDDRQKKQLLDFAQRSIPIVGFNSNSGGQGHHVNSESVLS*

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