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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G65700 | AT | Annotation by Michelle Graham. TAIR10: Small nuclear ribonucleoprotein family protein | chr1:24434463-24435870 REVERSE LENGTH=98 | SoyBase | E_val: 1.00E-57 | ISS |
| GO:0002237 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to molecule of bacterial origin | SoyBase | N/A | ISS |
| GO:0006626 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to mitochondrion | SoyBase | N/A | ISS |
| GO:0007165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: signal transduction | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0010103 | GO-bp | Annotation by Michelle Graham. GO Biological Process: stomatal complex morphogenesis | SoyBase | N/A | ISS |
| GO:0048443 | GO-bp | Annotation by Michelle Graham. GO Biological Process: stamen development | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005732 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: small nucleolar ribonucleoprotein complex | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG1784 | KOG | Small Nuclear ribonucleoprotein splicing factor | JGI | ISS | |
| PTHR15588 | Panther | LSM1 | JGI | ISS | |
| PF01423 | PFAM | LSM domain | JGI | ISS | |
| UniRef100_C6SWT2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SWT2_SOYBN | SoyBase | E_val: 2.00E-62 | ISS |
| UniRef100_I3NMM0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Hevea brasiliensis RepID=I3NMM0_HEVBR | SoyBase | E_val: 1.00E-57 | ISS |
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Glyma15g40590 not represented in the dataset |
Glyma15g40590 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma08g18410 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g254600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g40590.2 sequence type=transcript gene model=Glyma15g40590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATTTTTTGTCTTTCGAACCCTTTCTGCTCCCATTCGATCCTTTGTGGCTCATTGTATTCGAACGAACCCTAACAACGTCTGTGGCTCTGTGTGAGACTGCGAGCCACGAACCCAATCTCCGACGACGACGACCTCGGTCCAGGGACGACTTATCTCCGGAGACCCACAACTTTTCCGGCGACCAACCGTGCGCAGGTGCAAGGATAAGTGTGTGATCTATCTATAAACGCAAGATGTCAGCTGGGCCTGGACTTGAATCTCTTGTAGATCAGACAATTTCAGTCATTACAAATGATGGACGAAATATAGTGGGAGTCCTGAAAGGTTTTGATCAGGCAACAAATATAATTCTTGATGAGTCCCATGAACGAGTTTATTCTACCAAGGAAGGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGACAACATAAGTGTTGTTGGTGAACTAGATGAAGAACTGGATTCTAGTCTGGATTTGTCAAAACTCAGAGCTCATCCCTTGAAACCTGTTATCCATTGAGGTGAAATACTATGTGATGGATTTAATGAATGCATGCCTACTTGGTGGAAAGAGTCTTAGATTTGCGGCATTGTATACTAGAGTAGGCTGTGAAACTCTAAGAATATGCCGACAGCATAATATTTCTAATATTCTGATTCTGTTAGCATGTAACTCTTGTCAAACAAACAAATTCTGAGACTATCTGACGTGAAGAAACTATCTTCTAATTGGCCATTATTATACATATAGATATAGATGTTTCTTTCGGTGAGACTTATATGATTGCTACACGAATGTATCTTATATAAGAAAGTGCATTTACTATTTATACATGTGTCACCGATGATCTTTGTCAAAAGGCATGATTTCTTTTAATTGCAAGATTGTATGTATACTC >Glyma15g40590.3 sequence type=transcript gene model=Glyma15g40590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ACCAATCCAACTACTAAATATAACAATGATAATAACAAAAAGGAAAAGACATAACCTACTTGCAATGAACTACATACAAATCGAATCTAACTTTAGCAGTTGAAAATGCTGAAAATTTAGCAGTGTTGTGAAATTAGTAAAAAAAAAAACGGAGAAGCCGAAAGAGAAACCTCCGGTGAGACGATCGATGACGGAAGAGAGGTGGTTCTGGCTTTGGAGAGTTTGCTGAGCTCTGAAATCGAAATCGCTAATCACCGAAGAGAGCATCGAAGACAAGCCTTTGGCCAGCACGTCGGAGCTCTGTCGGAGGTGATCGTCGCCGTCGGAACCGTGGGAACTGGAAGGCTCCGTCGTTTCGAGTACGACGCTGTCGTTTTCCGCTGCTTCCATTGTCGTTTGGTTCAGTTCGGTGCGCAGAAGGAAGTGATGCTGTGACTGAGAAAAATCGTTCATGTCCTTAACAACCAAATTGAACGACTGCGAGCCACGAACCCAATCTCCGACGACGACGACCTCGGTCCAGGGACGACTTATCTCCGGAGACCCACAACTTTTCCGGCGACCAACCGTGCGCAGGTGCAAGGATAAGTGTGTGATCTATCTATAAACGCAAGATGTCAGCTGGGCCTGGACTTGAATCTCTTGTAGATCAGACAATTTCAGTCATTACAAATGATGGACGAAATATAGTGGGAGTCCTGAAAGGTTTTGATCAGGCAACAAATATAATTCTTGATGAGTCCCATGAACGAGTTTATTCTACCAAGGAAGGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGACAACATAAGTGTTGTTGGTGAACTAGATGAAGAACTGGATTCTAGTCTGGATTTGTCAAAACTCAGAGCTCATCCCTTGAAACCTGTTATCCATTGAGGTGAAATACTATGTGATGGATTTAATGAATGCATGCCTACTTGGTGGAAAGAGTCTTAGATTTGCGGCATTGTATACTAGAGTAGGCTGTGAAACTCTAAGAATATGCCGACAGCATAATATTTCTAATATTCTGATTCTGTTAGCATGTAACTCTTGTCAAACAAACAAATTCTGAGACTATCTGACGTGAAGAAACTATCTTCTAATTGGCCATTATTATACATATAGATATAGATGTTTCTTTCGGTGAGACTTATATGATTGCTACACGAATGTATCTTATATAAGAAAGTGCATTTACTATTTATACATGTGTCACCGATGATCTTTGTCAAAAGGCATGATTTCTTTTAATTGC
>Glyma15g40590.1 sequence type=CDS gene model=Glyma15g40590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCAGCTGGGCCTGGACTTGAATCTCTTGTAGATCAGACAATTTCAGTCATTACAAATGATGGACGAAATATAGTGGGAGTCCTGAAAGGTTTTGATCAGGCAACAAATATAATTCTTGATGAGTCCCATGAACGAGTTTATTCTACCAAGGAAGGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGACAACATAAGTGTTGTTGGTGAACTAGATGAAGAACTGGATTCTAGTCTGGATTTGTCAAAACTCAGAGCTCATCCCTTGAAACCTGTTATCCATTGA >Glyma15g40590.2 sequence type=CDS gene model=Glyma15g40590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCAGCTGGGCCTGGACTTGAATCTCTTGTAGATCAGACAATTTCAGTCATTACAAATGATGGACGAAATATAGTGGGAGTCCTGAAAGGTTTTGATCAGGCAACAAATATAATTCTTGATGAGTCCCATGAACGAGTTTATTCTACCAAGGAAGGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGACAACATAAGTGTTGTTGGTGAACTAGATGAAGAACTGGATTCTAGTCTGGATTTGTCAAAACTCAGAGCTCATCCCTTGAAACCTGTTATCCATTGA >Glyma15g40590.3 sequence type=CDS gene model=Glyma15g40590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCAGCTGGGCCTGGACTTGAATCTCTTGTAGATCAGACAATTTCAGTCATTACAAATGATGGACGAAATATAGTGGGAGTCCTGAAAGGTTTTGATCAGGCAACAAATATAATTCTTGATGAGTCCCATGAACGAGTTTATTCTACCAAGGAAGGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGACAACATAAGTGTTGTTGGTGAACTAGATGAAGAACTGGATTCTAGTCTGGATTTGTCAAAACTCAGAGCTCATCCCTTGAAACCTGTTATCCATTGA
>Glyma15g40590.1 sequence type=predicted peptide gene model=Glyma15g40590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSAGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVGELDEELDSSLDLSKLRAHPLKPVIH* >Glyma15g40590.2 sequence type=predicted peptide gene model=Glyma15g40590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSAGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVGELDEELDSSLDLSKLRAHPLKPVIH* >Glyma15g40590.3 sequence type=predicted peptide gene model=Glyma15g40590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSAGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVGELDEELDSSLDLSKLRAHPLKPVIH*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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