Report for Sequence Feature Glyma15g40520
Feature Type: gene_model
Chromosome: Gm15
Start: 47517836
stop: 47519765
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma15g40520
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G58660 AT
Annotation by Michelle Graham. TAIR10: Ribosomal protein L1p/L10e family | chr3:21701574-21702914 FORWARD LENGTH=446
SoyBase E_val: 1.00E-114 ISS
GO:0001510 GO-bp
Annotation by Michelle Graham. GO Biological Process: RNA methylation
SoyBase N/A ISS
GO:0006164 GO-bp
Annotation by Michelle Graham. GO Biological Process: purine nucleotide biosynthetic process
SoyBase N/A ISS
GO:0006412 GO-bp
Annotation by Michelle Graham. GO Biological Process: translation
SoyBase N/A ISS
GO:0009220 GO-bp
Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide biosynthetic process
SoyBase N/A ISS
GO:0005622 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: intracellular
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005730 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleolus
SoyBase N/A ISS
GO:0005840 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: ribosome
SoyBase N/A ISS
GO:0015934 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: large ribosomal subunit
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
GO:0003723 GO-mf
Annotation by Michelle Graham. GO Molecular Function: RNA binding
SoyBase N/A ISS
GO:0003735 GO-mf
Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome
SoyBase N/A ISS
KOG1685
KOG
Uncharacterized conserved protein
JGI ISS
PTHR23105 Panther
60S RIBOSOMAL PROTEIN L10A - RELATED
JGI ISS
PTHR23105:SF3 Panther
PBK1-RELATED
JGI ISS
PF00687 PFAM
Ribosomal protein L1p/L10e family
JGI ISS
UniRef100_G7IGY3 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Ribosomal L1 domain-containing protein n=1 Tax=Medicago truncatula RepID=G7IGY3_MEDTR
SoyBase E_val: 3.00E-145 ISS
UniRef100_UPI000233BE50 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233BE50 related cluster n=1 Tax=unknown RepID=UPI000233BE50
SoyBase E_val: 0 ISS
Expression Patterns of Glyma15g40520
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma15g40520
Paralog Evidence Comments
Glyma08g18460 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma15g40520 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.15g254100 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma15g40520
Coding sequences of Glyma15g40520
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma15g40520.1 sequence type=CDS gene model=Glyma15g40520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTTCCGAGAACGTAAGCCCCGAGACAGTATCCAAAGCCGTCGATGCTCTCCTCCAATGGCGCCGCTCCCAATCGGAGATTCAGAAACCAAAACTCTTGGGCGAAGACGAAGAATTCGTGTACCTGATCCTCACGCTGAAGAAGATCCCTTCAAAATCCCGAGTTAACCCTCACAAGATTCCTCTCCCGCACTCCCTCATCTCCCCTTTCTCCGAGCAGTGCCTCATCCTCGACGACCGGCCCAACAAGGCCCGCGTCACCAAAGCCCAGGCCCAAGCCAAAATCCAGTCCGAATCCATCCCCGTCCACAAAGTCCTCAAGCTCTCGAAACTCGCCTCCGATTACCGCCCCTTCGAGGCGAAGCGAAAACTCTGCGATTCTTATGATTTGTTTTTTGCAGAGAAGAGCATTGTGCCGCTCCTGCCGCGGCTTCTGGGGAAGAGTTTTTTCAAGAAGAGGAAGATTCCGGTGCCGGTGGACCTGAAGAAGGGGAGCTGGAAGGAGCAGGTGGAGAGGGCCTGCTCGTCCGCGATGCTGTTCATGAGGACGGGGACCTGTAGTGTGGTTAGGGTTGCCAAGGTGAGGATGGAGAGGGATGAGATTGTGGAGAATGTCGTTGCCGCGATTGAGGGGATTGTGGAGGTTGTGCCCAAGAAGTGGGGCAATGTGAGGTCGCTGCATTTGAAGCTGCTGGAGAGCGTGGCTCTGCCGGTCTACCAGACTGTTCCTGATGTGAAGTTGAAGATTGAGGGATTTAAGGTTGAGGAGAAGAAGAATGAGAAGGAGAGGGATGGTGAGGTTAGTGATTCGATTGAGGGAGGGACGGAGAAGAAGAAGAAGAAGAAGGGGAGGATTCATGAGGTTAGGTATATGGATGAGAATGTTGTGGAGGCTGGGATGGAAGATGAATTGGCGAGTGATGACGATGATAGTGAAGATGAGATGGTGAGTAAGAAGAGGAAGAAAGGGGTTTCGAGTGAGTTGAGTGGTGTTGAGCAATTGAAGAAGTTGGTATTTAATGAGTTGAGTGCCAATGGGAAGAAGAAGTCAAAGAAGGGCTGCTTGTCTGTTGGGAAGGGGGTTAAGGGAGGTTTGATTGAGGGGAGTGGAAGTGAATTGGTTGTGAAGGATGAGGAGTCGGGGGTGAAGAAGAAGAAGAAGAAGAGAGGGGATGTGAAGGCTACGAAAAGTGTAAAGGCTAAGATAATTAAGAAGGCTGTGTGA
Predicted protein sequences of Glyma15g40520
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma15g40520.1 sequence type=predicted peptide gene model=Glyma15g40520 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MASENVSPETVSKAVDALLQWRRSQSEIQKPKLLGEDEEFVYLILTLKKIPSKSRVNPHKIPLPHSLISPFSEQCLILDDRPNKARVTKAQAQAKIQSESIPVHKVLKLSKLASDYRPFEAKRKLCDSYDLFFAEKSIVPLLPRLLGKSFFKKRKIPVPVDLKKGSWKEQVERACSSAMLFMRTGTCSVVRVAKVRMERDEIVENVVAAIEGIVEVVPKKWGNVRSLHLKLLESVALPVYQTVPDVKLKIEGFKVEEKKNEKERDGEVSDSIEGGTEKKKKKKGRIHEVRYMDENVVEAGMEDELASDDDDSEDEMVSKKRKKGVSSELSGVEQLKKLVFNELSANGKKKSKKGCLSVGKGVKGGLIEGSGSELVVKDEESGVKKKKKKRGDVKATKSVKAKIIKKAV*