Glyma15g40410 - SoyBase

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Report for Sequence Feature Glyma15g40410

Feature Type:	gene_model
Chromosome:	Gm15
Start:	47389111
stop:	47395788
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma15g40410

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G79030	AT	Annotation by Michelle Graham. TAIR10: Chaperone DnaJ-domain superfamily protein \| chr1:29730922-29733570 REVERSE LENGTH=561	SoyBase	E_val: 0	ISS
GO:0006457	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein folding	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0031072	GO-mf	Annotation by Michelle Graham. GO Molecular Function: heat shock protein binding	SoyBase	N/A	ISS
GO:0051082	GO-mf	Annotation by Michelle Graham. GO Molecular Function: unfolded protein binding	SoyBase	N/A	ISS
KOG0720	KOG	Molecular chaperone (DnaJ superfamily)	JGI		ISS
PTHR24078	Panther	DNAJ HOMOLOG SUBFAMILY C MEMBER	JGI		ISS
PTHR24078:SF11	Panther		JGI		ISS
PF00226	PFAM	DnaJ domain	JGI		ISS
UniRef100_G7IJ69	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Chaperone protein dnaJ n=1 Tax=Medicago truncatula RepID=G7IJ69_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233BB94	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233BB94 related cluster n=1 Tax=unknown RepID=UPI000233BB94	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma15g40410

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g40410

Paralog	Evidence	Comments
Glyma08g18540	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g40410 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.15g253300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma15g40410

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma15g40410

Limit To All Plant Sequences

>Glyma15g40410.3   sequence type=transcript   gene model=Glyma15g40410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCTCTCTCCTCCTCTGCAACAAAACAATTCTCTCACTCCTCCTTCCACCCTTTACGAAACTTTTTGAAACTTTTTACAAACTCTCTCTTTATCACAAGCAATACGAGAGGAATAAAAGTTACTCATTAAACGAAAAATCAAAAAGAGAAAGAAAAGCCAAGGTTTTCTCCCTCCTCTGCAAAAAAAAAAACCCAATAACCCCTTCTTCTTCCCTTTTCCTCATTCTCCGTCGGTGCTTCAGAGTCTCAACTTTGATCTTCTCCTCAAATGGCTCATACCCTTTTGTTTTAGGGTTTCCATGGTTACTGGGCCACCTTCAAGTTCGTTCCTTTCGGTGTTTTTCGCCCCCATTCTGTAGTGCTAGGTCTTGAACCCGCTAAAGGGTCGTCGAGGCTGGAGTGAGTTGAAGTGGGAGCGTGGAAAACAGAAAAGGGGTGGTCGTCGCATTAAATTTGTCAAAAAGAGAGGGGTTTTATCTTCTTATTACTTTGTGTGTTTTTATGTTTTTTGTGGGGCTTCTGTGAACAGTGGTTGCTTTTTGGAAGCTTATTTTGGAAGCAATTTACTCTTCCCCTTTTGAACGTGATTGTATTTAGTGCTCTCATGGACTCTCACAATGTTCTCTTTTGGTCTTATCAATAGTGGGGGTTGTGTTTTTTTTTTCTTCTTTCCCTTTTTTGATGAGGAGCCATTGGACTTGTGAAACCCGTGAATTTGGTGGATTTATGTAGGGAGTTGGAGTAGCAGGCCTTATTTATTTCATTTATTTAGTGAATTTTGGTAGATCAGGGTGGTGGTTTGTTTATGGATGGCATTGATGATTTAGGGTCACAATGGTTTGGATATATGGGGCATTGGATCGATGGTGATGGGAATCAATAGCATTAGCCATTTGTTATTTTGTTAGGAATGATGATATGAGGTTCCATTTGTAGTCATAGGAGTGAGGTTTCACCAAGATTCTGGGGAATTTGAGGAGGCCTTGGTGATGGAGGACATAGGGTTGTTCAAGCAGTGTTGGCAATGGTTTCGATCGCAGAAGGACGCCGGCTGGCGTGCTCGAACCACAGTGACATGGTGCAGAGATAGGACTGCTGTGTTCATTGAACGGCATTGGCCTATGGTGTGCAGGGGCTGCTCCAGATTGGGGAGCTTACTGAGGTTGTCAGTGATTTTCTGGAAGGACTCTGCTCTGAGGGGCTTTCAGTCCTTCATTAGGTTTGGTCCAGTGATGCTTCTGCTTATAATGTGGAGCTGCTTTCTGAGTCTGACTTCGATGTATTGCTTGGTTTACGTGCTTGTTAGCATGGGTGTTGCTGGAGTAGCTGTCCAATACTTGGGTTATACTCCTGGGCTTTTTATTGTGGGCCTTTTTGCCATCCTTATTTTGTGGATGTATGCTAACTTCTGGATAACCGGGACATTACTCGTAGTTGGAGGTTATTTATTCTCCCTAAATCATGCACGCCTGGTGGTATTAATTGGAACTATATATGCTATATACTGTGTTCAAGTACGAGTGGGATGGCTGGGTGTTTTTCTTGCTATTAACCTTGCATTCCTCTCTAATGACATTTTGAATTTTCTGCTCCAATGGTTTGATAATGTGAGTGAGAGTTCACATTCTGAAGAGCAAAAGCAATCAGAAACAATTGTGGAAGATGATTTCTCTGAAGAGTGTGAATATCCTATCCCTACTGATGAATCTGAGAATTTGCATTCATGTAAATCATCCAGTAAACCTGCTGTTACCACAGCAGTTGTTGATAATAAGAAAGAACTTTCTGTTAACAAAGTTGTTAAAGAGCAAATAACAACAACAACAACAACAAGCTCGGTTGATGAAATGAAAAGGATCCTCAAGAGTCTGAATCATTATGATGCCCTTGGATTTAGCCGCCACAAGAAGATTGATGCCGCTGTTTTGAAAAAGGAATACAGGAAAAAGGCTATGCTTGTTCATCCTGATAAAAATATGGGCAGTTCTTTGGCAAGTGAGTCATTTAAGAAGCTTCAGTGCGCATACGAGGTTCTTTCTGACTCCGTAAAGAAGCGAGACTATGATGAGCAATTAAGAAAAGAAGAATCCATGGCTAAGAGTGTCTGCCAGAGATCCCATAGTAGTTCACATCAGGATAATGCTGATTATCGTTCTGAAGAATCCAGACGAATACAGTGCACCAAGTGTGGGAATTCACATATTTGGGTATGCACCAACAGGAACAAGGCCAAAGCAAGATGGTGTCAGGACTGCTGTCAGTTTCATCAAGCCAAGGATGGAGATGGATGGGTTGAATATAAAGGGTCTTTGGTTTTTGACAGGCCCCAAAAGGTGGAGATTCCACGTGCTTTTGTTTGTGCCGAGAGCAAAATTTTTGATGTGTCAGAATGGGCTATATGTCAGGGAATGGCTTGCAGGCCAAATACCCATCGACCGAGTTTCCATGTAAACATGGTTGGCTTGGAGAAAAGCCAACGTTGCAACTCGAGTAGATTCCCGTGGGATTTTGATGCTGAAATGATGGATGAAGATGAAGAGGCATTTGACCTGTGGCTTGAGCAGGCTCTGGCATCTGGTCTCTTCTGCGAGACCTCTAAACGCAGGAAGAGTTGGAGTCCATTCAAATTGCATCAAAAGAAAGGGAAGAAGCAATGGAGAAGAACATCGTGCTGAAGCTTGAAGTCTGTTGGGAAAATTCATATTTCATTGCATGTCCTCAAGGGATTGATGGAGTTAAACATTTTGTATAAGAAAAGTGATGGATGCATTGCTGATATCAAAACAAGTAGCAAGGACTAGCAACACTCAAAAAGATGCCTTATCAAAGATAGATGAGAGCCATGGGTTAAATTATGAGAAGAGAACCAAGGTTGGCAAGTTACTTAACCACATCCCATATATGTACTAAGGTATTAGAAGTTCAAAAGAACCTTGGTTTCTAGGTTTTTCCCTCATTGCTCATTTGCTCGTTCAGGTTTACAGAATCCAGCATGAGCTGGTTGACATGGATCTGTGGCTTAGTGTATTCTTGTTACATTCATTAGAAGGTGGGTTTTTTTAGGGTTACCAAGGAAAGGACTCCTACTTTTGGTCCTTTGTACATACGGCTAATAAAAATTTCTCATTTGGTAAATGACTACTTGATTATCAGCATTCATTTTAGAACCATGTAACATCCATGACTTTGAAAAAAGAAAAAAAGAAATTTTTTCTTAATTTTAATCCTTGGAGCTAATAGAAGAGGGATCTGATGAAACACAGTGCTTTCCATATGTGATTGGTAGTGCTTCCACCTATAGAGATTGGTAAACTCTCA

Coding sequences of Glyma15g40410

Limit To All Plant Sequences

>Glyma15g40410.2   sequence type=CDS   gene model=Glyma15g40410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTCAGGGTGTTGCTGGAGTAGCTGTCCAATACTTGGGTTATACTCCTGGGCTTTTTATTGTGGGCCTTTTTGCCATCCTTATTTTGTGGATGTATGCTAACTTCTGGATAACCGGGACATTACTCGTAGTTGGAGGTTATTTATTCTCCCTAAATCATGCACGCCTGGTGGTATTAATTGGAACTATATATGCTATATACTGTGTTCAAGTACGAGTGGGATGGCTGGGTGTTTTTCTTGCTATTAACCTTGCATTCCTCTCTAATGACATTTTGAATTTTCTGCTCCAATGGTTTGATAATGTGAGTGAGAGTTCACATTCTGAAGAGCAAAAGCAATCAGAAACAATTGTGGAAGATGATTTCTCTGAAGAGTGTGAATATCCTATCCCTACTGATGAATCTGAGAATTTGCATTCATGTAAATCATCCAGTAAACCTGCTGTTACCACAGCAGTTGTTGATAATAAGAAAGAACTTTCTGTTAACAAAGTTGTTAAAGAGCAAATAACAACAACAACAACAACAAGCTCGGTTGATGAAATGAAAAGGATCCTCAAGAGTCTGAATCATTATGATGCCCTTGGATTTAGCCGCCACAAGAAGATTGATGCCGCTGTTTTGAAAAAGGAATACAGGAAAAAGGCTATGCTTGTTCATCCTGATAAAAATATGGGCAGTTCTTTGGCAAGTGAGTCATTTAAGAAGCTTCAGTGCGCATACGAGGTTCTTTCTGACTCCGTAAAGAAGCGAGACTATGATGAGCAATTAAGAAAAGAAGAATCCATGGCTAAGAGTGTCTGCCAGAGATCCCATAGTAGTTCACATCAGGATAATGCTGATTATCGTTCTGAAGAATCCAGACGAATACAGTGCACCAAGTGTGGGAATTCACATATTTGGGTATGCACCAACAGGAACAAGGCCAAAGCAAGATGGTGTCAGGACTGCTGTCAGTTTCATCAAGCCAAGGATGGAGATGGATGGGTTGAATATAAAGGGTCTTTGGTTTTTGACAGGCCCCAAAAGGTGGAGATTCCACGTGCTTTTGTTTGTGCCGAGAGCAAAATTTTTGATGTGTCAGAATGGGCTATATGTCAGGGAATGGCTTGCAGGCCAAATACCCATCGACCGAGTTTCCATGTAAACATGGTTGGCTTGGAGAAAAGCCAACGTTGCAACTCGAGTAGATTCCCGTGGGATTTTGATGCTGAAATGATGGATGAAGATGAAGAGGCATTTGACCTGTGGCTTGAGCAGGCTCTGGCATCTGGTCTCTTCTGCGAGACCTCTAAACGCAGGAAGAGTTGGAGTCCATTCAAATTGCATCAAAAGAAAGGGAAGAAGCAATGGAGAAGAACATCGTGCTGA

>Glyma15g40410.3   sequence type=CDS   gene model=Glyma15g40410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGACATAGGGTTGTTCAAGCAGTGTTGGCAATGGTTTCGATCGCAGAAGGACGCCGGCTGGCGTGCTCGAACCACAGTGACATGGTGCAGAGATAGGACTGCTGTGTTCATTGAACGGCATTGGCCTATGGTGTGCAGGGGCTGCTCCAGATTGGGGAGCTTACTGAGGTTGTCAGTGATTTTCTGGAAGGACTCTGCTCTGAGGGGCTTTCAGTCCTTCATTAGGTTTGGTCCAGTGATGCTTCTGCTTATAATGTGGAGCTGCTTTCTGAGTCTGACTTCGATGTATTGCTTGGTTTACGTGCTTGTTAGCATGGGTGTTGCTGGAGTAGCTGTCCAATACTTGGGTTATACTCCTGGGCTTTTTATTGTGGGCCTTTTTGCCATCCTTATTTTGTGGATGTATGCTAACTTCTGGATAACCGGGACATTACTCGTAGTTGGAGGTTATTTATTCTCCCTAAATCATGCACGCCTGGTGGTATTAATTGGAACTATATATGCTATATACTGTGTTCAAGTACGAGTGGGATGGCTGGGTGTTTTTCTTGCTATTAACCTTGCATTCCTCTCTAATGACATTTTGAATTTTCTGCTCCAATGGTTTGATAATGTGAGTGAGAGTTCACATTCTGAAGAGCAAAAGCAATCAGAAACAATTGTGGAAGATGATTTCTCTGAAGAGTGTGAATATCCTATCCCTACTGATGAATCTGAGAATTTGCATTCATGTAAATCATCCAGTAAACCTGCTGTTACCACAGCAGTTGTTGATAATAAGAAAGAACTTTCTGTTAACAAAGTTGTTAAAGAGCAAATAACAACAACAACAACAACAAGCTCGGTTGATGAAATGAAAAGGATCCTCAAGAGTCTGAATCATTATGATGCCCTTGGATTTAGCCGCCACAAGAAGATTGATGCCGCTGTTTTGAAAAAGGAATACAGGAAAAAGGCTATGCTTGTTCATCCTGATAAAAATATGGGCAGTTCTTTGGCAAGTGAGTCATTTAAGAAGCTTCAGTGCGCATACGAGGTTCTTTCTGACTCCGTAAAGAAGCGAGACTATGATGAGCAATTAAGAAAAGAAGAATCCATGGCTAAGAGTGTCTGCCAGAGATCCCATAGTAGTTCACATCAGGATAATGCTGATTATCGTTCTGAAGAATCCAGACGAATACAGTGCACCAAGTGTGGGAATTCACATATTTGGGTATGCACCAACAGGAACAAGGCCAAAGCAAGATGGTGTCAGGACTGCTGTCAGTTTCATCAAGCCAAGGATGGAGATGGATGGGTTGAATATAAAGGGTCTTTGGTTTTTGACAGGCCCCAAAAGGTGGAGATTCCACGTGCTTTTGTTTGTGCCGAGAGCAAAATTTTTGATGTGTCAGAATGGGCTATATGTCAGGGAATGGCTTGCAGGCCAAATACCCATCGACCGAGTTTCCATGTAAACATGGTTGGCTTGGAGAAAAGCCAACGTTGCAACTCGAGTAGATTCCCGTGGGATTTTGATGCTGAAATGATGGATGAAGATGAAGAGGCATTTGACCTGTGGCTTGAGCAGGCTCTGGCATCTGGTCTCTTCTGCGAGACCTCTAAACGCAGGAAGAGTTGGAGTCCATTCAAATTGCATCAAAAGAAAGGGAAGAAGCAATGGAGAAGAACATCGTGCTGA

Predicted protein sequences of Glyma15g40410

Limit To All Plant Sequences

>Glyma15g40410.2   sequence type=predicted peptide   gene model=Glyma15g40410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLQGVAGVAVQYLGYTPGLFIVGLFAILILWMYANFWITGTLLVVGGYLFSLNHARLVVLIGTIYAIYCVQVRVGWLGVFLAINLAFLSNDILNFLLQWFDNVSESSHSEEQKQSETIVEDDFSEECEYPIPTDESENLHSCKSSSKPAVTTAVVDNKKELSVNKVVKEQITTTTTTSSVDEMKRILKSLNHYDALGFSRHKKIDAAVLKKEYRKKAMLVHPDKNMGSSLASESFKKLQCAYEVLSDSVKKRDYDEQLRKEESMAKSVCQRSHSSSHQDNADYRSEESRRIQCTKCGNSHIWVCTNRNKAKARWCQDCCQFHQAKDGDGWVEYKGSLVFDRPQKVEIPRAFVCAESKIFDVSEWAICQGMACRPNTHRPSFHVNMVGLEKSQRCNSSRFPWDFDAEMMDEDEEAFDLWLEQALASGLFCETSKRRKSWSPFKLHQKKGKKQWRRTSC*

>Glyma15g40410.3   sequence type=predicted peptide   gene model=Glyma15g40410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEDIGLFKQCWQWFRSQKDAGWRARTTVTWCRDRTAVFIERHWPMVCRGCSRLGSLLRLSVIFWKDSALRGFQSFIRFGPVMLLLIMWSCFLSLTSMYCLVYVLVSMGVAGVAVQYLGYTPGLFIVGLFAILILWMYANFWITGTLLVVGGYLFSLNHARLVVLIGTIYAIYCVQVRVGWLGVFLAINLAFLSNDILNFLLQWFDNVSESSHSEEQKQSETIVEDDFSEECEYPIPTDESENLHSCKSSSKPAVTTAVVDNKKELSVNKVVKEQITTTTTTSSVDEMKRILKSLNHYDALGFSRHKKIDAAVLKKEYRKKAMLVHPDKNMGSSLASESFKKLQCAYEVLSDSVKKRDYDEQLRKEESMAKSVCQRSHSSSHQDNADYRSEESRRIQCTKCGNSHIWVCTNRNKAKARWCQDCCQFHQAKDGDGWVEYKGSLVFDRPQKVEIPRAFVCAESKIFDVSEWAICQGMACRPNTHRPSFHVNMVGLEKSQRCNSSRFPWDFDAEMMDEDEEAFDLWLEQALASGLFCETSKRRKSWSPFKLHQKKGKKQWRRTSC*

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