SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G17220 | AT | Annotation by Michelle Graham. TAIR10: Translation initiation factor 2, small GTP-binding protein | chr1:5885383-5890165 FORWARD LENGTH=1026 | SoyBase | E_val: 0 | ISS |
| GO:0006413 | GO-bp | Annotation by Michelle Graham. GO Biological Process: translational initiation | SoyBase | N/A | ISS |
| GO:0009902 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chloroplast relocation | SoyBase | N/A | ISS |
| GO:0010027 | GO-bp | Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization | SoyBase | N/A | ISS |
| GO:0010155 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of proton transport | SoyBase | N/A | ISS |
| GO:0019288 | GO-bp | Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway | SoyBase | N/A | ISS |
| GO:0034660 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ncRNA metabolic process | SoyBase | N/A | ISS |
| GO:0042793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transcription from plastid promoter | SoyBase | N/A | ISS |
| GO:0046777 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0003743 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: translation initiation factor activity | SoyBase | N/A | ISS |
| GO:0003924 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GTPase activity | SoyBase | N/A | ISS |
| GO:0005525 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GTP binding | SoyBase | N/A | ISS |
| KOG1145 | KOG | Mitochondrial translation initiation factor 2 (IF-2; GTPase) | JGI | ISS | |
| PTHR23115 | Panther | TRANSLATION FACTOR | JGI | ISS | |
| PTHR23115:SF41 | Panther | JGI | ISS | ||
| PF00009 | PFAM | Elongation factor Tu GTP binding domain | JGI | ISS | |
| PF03144 | PFAM | Elongation factor Tu domain 2 | JGI | ISS | |
| PF04760 | PFAM | Translation initiation factor IF-2, N-terminal region | JGI | ISS | |
| PF11987 | PFAM | Translation-initiation factor 2 | JGI | ISS | |
| UniRef100_I1MJ42 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Translation initiation factor IF-2 n=1 Tax=Glycine max RepID=I1MJ42_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233BB92 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233BB92 related cluster n=1 Tax=unknown RepID=UPI000233BB92 | SoyBase | E_val: 0 | ISS |
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Glyma15g40370 not represented in the dataset |
Glyma15g40370 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma08g18580 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g253000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g40370.3 sequence type=CDS gene model=Glyma15g40370 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTAATTTTGGTGGGGAACGTGCAGGGAACAATGAGTTCTCTTGCTTCTCCAGTGAGTTTGGGGAGCCTCATGGGTGTGAGTTCATCTGGAAGGGCCCATTCTATGGTGAGGAGGGTCTCTCTTTCAAGAGGGAACTGTAGGGGGAGAAAGAGATGGCATTGTGTGTCATTGTCTGTGTGTAGATATTCAGTGACCACAACTGATTTTGTTGCTGACCAAGGGAACTCAGTGTCCCTTGATTCTAACAGTAGTAGTAGTAGTAGTAAGGGTGGAGATGATGGTGCTGGTTTTGTGCTTAAGCCTCCTCCTAAGCCTGTGTTGAAGTCCCCAGAGAATAAGAGTGACCCCATTTTGGGGCCCTCAAGGACTATTGGGGACCCTGGGGATGTGGAAGAGAAGAATAAGGTGATTGAATCACTTGGGGAGGTGTTGGAGAAGGCGGAAAAGCTGGGGAGTTCTAAGGTGAATGGTGAAAGGAATAATGGTTCAATGAATAAACCGGTAAGGAGTAATGCAGATGCTAGTCCTAGGGCTGATAAACTGGTGAATTCAGCGGCATATCAGAAGTCTAAAACCATGAAGAGTGTATGGCGTAAAGGGGACACGGTTGCATCGGTGCAGAAGGTAGTGAAGGAAGTGCCAAAGCCTAATAGTAACAAGAATGAAGGGGAGAAGACTCAAACAAGGGGAGGGGAGGAGGTGGTATCCCAAACTCGTGCTCCTCAACTGCCTTTGAAACCTCAACCGCCTTCACAACCTCAACCGGCGTTGCTATCAAAACCTTCGATAGCTCCCCCACCTGTCAAAAAACCTGTTGTTTTGAGGGACAAGGGAGTATCTGAAACAACATCAGTTAAACCTAAAGAAAAGAAGTCACCCATCTTGATTGATAAATTTGCTTCCAAGAAACCGGTAGTAGATCCTCTAATTGCGCAAGCAGTTCTAGCCCCTCCAAAACCAGGGAAGGGACCTCCCCCGGGAAAGTTTAAAGATGATTTCCGGAAGAAAGGTGCTACGACTGGGGGACCAAGAAGACGGATTTTAGAGGATGATGTGATTCATGATGAGGACGCATCTGAACTCAATGTCTCTATTCCTGGTGCTGCAACAGCAAGAAAAGGAAGGAAATGGAGTAAAGCAAGTCGAAGGGCAGCACGACTCCAGGCTGCCAGGGATGCCGCTCCCGTCAAAGTAGAAATTCTAGAGGTTGGTGACAAAGGTATGCTGGTGGAGGAATTAGCCTACTGTTTGGCAACCAGTGAAGGTGAGATCCTGGGTTATCTGTACTCCAAGGGAATTAAACCAGATGGGGTACAAACAATAGACAAAGATATGGTAAAGATGATTTGTAAAGAGTATGATGTGGAAGTCATAGATGCTGATCCATTCAAAGTTGAAGGTTTGGTGAAGAAAAAAGAAATTCTTGATAAAGATGACCTCGACAAACTCAAAGACAGGCCTCCTGTTATTACTATTATGGGCCATGTAGATCATGGCAAGACAACTCTTTTGGATTATATACGGAAGAGCAAGGTAGCTGCTTCTGAAGCTGGTGGGATCACACAGGGAATTGGGGCCTATAAAGTGGAAGTACCTGTTGATGGCAAAAACTTGCCATGTGTTTTCCTTGACACTCCTGGGCATGAGGCATTTGGAGCAATGAGAGCTCGTGGAGCAAGCGTAACAGACATTGCTATTATTGTTGTGGCTGCTGATGATGGGATTCGTCCTCAAACAAATGAAGCTATAGCTCATGCCAAAGCAGCGGGAGTACCCATAATCATTGCAATAAACAAGATAGATAAAGATGGAGCAAATCCAGAAAGAGTCATGCAAGAGCTTTCTTCAATTGGTTTAATGCCAGAAGACTGGGGCGGTGACATCCCAATGGTTCCGATAAGTGCTCTCAAAGGAAAGAACATAGATGATCTTTTGGAAACTGTTATGCTTGTTGCCGAGTTGCAAGAACTGAAAGCTAATCCTGATAGAAGTGCGAAGGGAACTGTTGTTGAGGCGGGGCTAGATAAATCAAAGGGACCATTCGCTTCATTTATTGTGCAGAATGGCACCCTCAGACGGGGAGATATAGTAGTTTGTGGAGAAGCTTTTGGAAAGGTGCGGGCTTTATTTGATGATGGTGGAAAGCGGGTTGATGAAGCTACACCCTCTATACCTGTACAGGTTATTGGATTGAATAATGTTCCAATTGCTGGTGATGAATTTGAGGTTATTGAATCCCTTGATACTGCACGTGAAAGGGCAGAAACTCGTGCTGAGTCATTGCGTAATGAGCGTATTTCAGCAAAGGCAGGGGATGGAAAGGTCACCCTTTCTTCTTTAGCTTCAGCAGTTTCGTCAGGAAAGCTGTCTGGACTAGATTTGCATCAACTAAATATTATTTTGAAGGTTGATCTTCAGGGATCTATTGAAGCTGTCAGAAAAGCTCTGGAGATTCTACCACAAGACAATGTCACTCTGAAGTTTTTGTTGGAGGCAACAGGTGATGTAAGCACAAGTGATGTGGACCTTGCAGTTGCAAGCAAGGCCATCATTTTGGGATTTAATGTGAAAGCACCAGGCTCTGTGAAAAGCTATGCTGAGAACAAAGCTGTTGAGATTAGATTATATAAAGTTATTTATGAATTGATTGATGATGTACGAAATGCAATGGAAGGACTCCTGGAACCTGTTGAGGAACATGTAACAATTGGTTCAGCAGTAGTACGGGCCGTATTTAGCAGCGGTAGTGGTCGTGTTGCTGGATGTATGGTTACAGAGGGAAAAATACTACAAGACTGTGGTATTCGAGTCAAGCGGAAGGGAAAAGTAGTTCATGTTGGTATTCTTGATTCTTTGAGACGGGTGAAGGAGATTGTTAAAGAGGTAAATGCCGGTCTCGAGTGTGGACTTGGGTTAGAAGACTTTGATGATTGGGAAGAGGGTGACATTCTTGAAGTCTTCAACACAGTTCAGAAGAGGAGGACCCTTGAAGAGGCCTCAGCATCAATGGCAGCTGCTGTGGAGGGAGTAGGAGTTGCATTGTAG
>Glyma15g40370.3 sequence type=predicted peptide gene model=Glyma15g40370 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLILVGNVQGTMSSLASPVSLGSLMGVSSSGRAHSMVRRVSLSRGNCRGRKRWHCVSLSVCRYSVTTTDFVADQGNSVSLDSNSSSSSSKGGDDGAGFVLKPPPKPVLKSPENKSDPILGPSRTIGDPGDVEEKNKVIESLGEVLEKAEKLGSSKVNGERNNGSMNKPVRSNADASPRADKLVNSAAYQKSKTMKSVWRKGDTVASVQKVVKEVPKPNSNKNEGEKTQTRGGEEVVSQTRAPQLPLKPQPPSQPQPALLSKPSIAPPPVKKPVVLRDKGVSETTSVKPKEKKSPILIDKFASKKPVVDPLIAQAVLAPPKPGKGPPPGKFKDDFRKKGATTGGPRRRILEDDVIHDEDASELNVSIPGAATARKGRKWSKASRRAARLQAARDAAPVKVEILEVGDKGMLVEELAYCLATSEGEILGYLYSKGIKPDGVQTIDKDMVKMICKEYDVEVIDADPFKVEGLVKKKEILDKDDLDKLKDRPPVITIMGHVDHGKTTLLDYIRKSKVAASEAGGITQGIGAYKVEVPVDGKNLPCVFLDTPGHEAFGAMRARGASVTDIAIIVVAADDGIRPQTNEAIAHAKAAGVPIIIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVPISALKGKNIDDLLETVMLVAELQELKANPDRSAKGTVVEAGLDKSKGPFASFIVQNGTLRRGDIVVCGEAFGKVRALFDDGGKRVDEATPSIPVQVIGLNNVPIAGDEFEVIESLDTARERAETRAESLRNERISAKAGDGKVTLSSLASAVSSGKLSGLDLHQLNIILKVDLQGSIEAVRKALEILPQDNVTLKFLLEATGDVSTSDVDLAVASKAIILGFNVKAPGSVKSYAENKAVEIRLYKVIYELIDDVRNAMEGLLEPVEEHVTIGSAVVRAVFSSGSGRVAGCMVTEGKILQDCGIRVKRKGKVVHVGILDSLRRVKEIVKEVNAGLECGLGLEDFDDWEEGDILEVFNTVQKRRTLEEASASMAAAVEGVGVAL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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