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Report for Sequence Feature Glyma15g40350

Feature Type:gene_model
Chromosome:Gm15
Start:47324478
stop:47329927
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g40350
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G72250AT Annotation by Michelle Graham. TAIR10: Di-glucose binding protein with Kinesin motor domain | chr1:27192902-27198118 FORWARD LENGTH=1203 SoyBaseE_val: 0ISS
GO:0000226GO-bp Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization SoyBaseN/AISS
GO:0000911GO-bp Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation SoyBaseN/AISS
GO:0006306GO-bp Annotation by Michelle Graham. GO Biological Process: DNA methylation SoyBaseN/AISS
GO:0006342GO-bp Annotation by Michelle Graham. GO Biological Process: chromatin silencing SoyBaseN/AISS
GO:0006346GO-bp Annotation by Michelle Graham. GO Biological Process: methylation-dependent chromatin silencing SoyBaseN/AISS
GO:0007018GO-bp Annotation by Michelle Graham. GO Biological Process: microtubule-based movement SoyBaseN/AISS
GO:0009909GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of flower development SoyBaseN/AISS
GO:0016458GO-bp Annotation by Michelle Graham. GO Biological Process: gene silencing SoyBaseN/AISS
GO:0031047GO-bp Annotation by Michelle Graham. GO Biological Process: gene silencing by RNA SoyBaseN/AISS
GO:0031048GO-bp Annotation by Michelle Graham. GO Biological Process: chromatin silencing by small RNA SoyBaseN/AISS
GO:0034968GO-bp Annotation by Michelle Graham. GO Biological Process: histone lysine methylation SoyBaseN/AISS
GO:0048451GO-bp Annotation by Michelle Graham. GO Biological Process: petal formation SoyBaseN/AISS
GO:0048453GO-bp Annotation by Michelle Graham. GO Biological Process: sepal formation SoyBaseN/AISS
GO:0051322GO-bp Annotation by Michelle Graham. GO Biological Process: anaphase SoyBaseN/AISS
GO:0051567GO-bp Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0003777GO-mf Annotation by Michelle Graham. GO Molecular Function: microtubule motor activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
KOG0239 KOG Kinesin (KAR3 subfamily) JGI ISS
PTHR24115Panther FAMILY NOT NAMED JGI ISS
PTHR24115:SF171Panther SUBFAMILY NOT NAMED JGI ISS
PF00225PFAM Kinesin motor domain JGI ISS
UniRef100_G7IJ61UniRef Annotation by Michelle Graham. Most informative UniRef hit: Kinesin-4 n=1 Tax=Medicago truncatula RepID=G7IJ61_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000233BE4CUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233BE4C related cluster n=1 Tax=unknown RepID=UPI000233BE4C SoyBaseE_val: 0ISS

Expression Patterns of Glyma15g40350
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g40350
ParalogEvidenceComments
Glyma08g18590 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g40350 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g252800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma15g40350
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma15g40350
>Glyma15g40350.1   sequence type=CDS   gene model=Glyma15g40350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGGATAATAATCAATGGTGTCTCTATGACCATGACCCACTTCTTCTCACAGACGTTTCTTTGCAACAAGAATCCTCTTCTTATACTCACTGCTCCAGTTCTCTTTCACAAGCATCACTGAGCTCTCGGAGTTTGGCTATGGCGGACAAGCCTGTGTCTCGCGGTGACAGCCCCAGCATTGGGTTTTCTCAGGAAAATGGAAGATTTGAAGGGAACAGCGTGAAATTCGATGACCCAATTGTGAAAAATGTGTTTGATGGAAGATCAATTTTGGGGTATTCTCTTACATCCCCAGATTTGGTCATTTGTGGCTCACCAGATATTGCTGGAATCAGCTATGGTGATTCCCCTGAGTTGTTGAAGAACAAACATTCCAAGGATGTGGAGCAATCTATGGAGCTTTCTCTAGAGTATGGAATCAAGGGGTCTCAAGTTGAAGCTGACAATGGCCATAAGATCCCAACCGTTAAATTCTCAAACTTTTGTCAAGCTTTTGAGCAAGAGGAAGAGCTGCTATCCCCTGAAGCCTCCTTTGAGCTTCTTCCACCTCTTGTAACCAAGAATGAGTCACCCCAAGATCTCCCTCTTAGAGATACTGAGATGCTAGAAGACATTGGAGTGTCTCAGGAGGCAGAAATGGAGTCCTCCGAAGATACCGAGGATATTGGGATGGAAGCGAAGTTTAAGAGGCTGAAAAGAGACTTTGACAGTCAGAGAAAGGAGCTGACGGAAACAAGGAGGGAGTTGGGGGAGATCAAGAGAGAGAATCAACAGAAGAGTAGAGAATGCCAAGAAGCTTGGAACTCCTTGAAAGAGCTTCAAAATGAGCTAATGCGCAAGTCCATGCATGTAGGATCTTTGGCATTTGCCATTGAGGGGCAAGTGAAGGAGAAAAGTAAGTGGTTTTCATCACTGAGAGACTTGACGAGGAAATTGAAGATTATGAAAATGGAACACATCAAGCTATTAGAGGAAGCAGAGGCAAGCAAAAAATATCAAGCAGATATGAGAGAAATGGGGCTTATTATTAAGTCCAAAATAAATGAACAGCTGGAGTCACATGAAGATCTCAAGTCCAAATATATTGAAGGGGCTACGGAACGGAAAGATCTTTACAATAAGGTTTTGGAGTTGAGAGGAAACATAAGGGTCTTTTGCCGTTGTAGGCCTCTCAACACCGACGAGATATATGCAGGAGCAACAGTGGCCTTAGATTTTGAATCTGCGAAAGATGGTGATTTAACTGTAATGTCAAATGGAGCTCCTAAGAGGACTTTCAAGTTTGATGCTGTCTTTGGTCCCCAAGCTGAGCAAGCTGATATTTTTAAAGACACAGCACCATTTGCAACCTCAGTTCTAGATGGGTTCAATGTATGCATTTTTGCATATGGTCAGACTGGGACAGGAAAAACTTTCACAATGGAGGGCACAGAAGAGGCTCGAGGTGTTAATTTCAGGACTCTTGAGAAAATGTTTGACATAATCAAGGAGAGGCAGAAGCTCTACTGTTATGATATTTCTGTAAGTGTCTTAGAAGTGTACAATGAGCAAATAAGAGATTTGCTGGTAGCAGGAAATCATCCAGGAACAGCTGCAAAAAGACTTGAGATAAGGCAAGCTGGTGAAGGAATGCATCACATTCCAGGGTTGGTTGAGGCACATGTGAACAATATGACTGAAGTCTGGGAAGTCCTACAAACCGGTAGCAATGCGAGGGCAGTAAGCTCAACCAATTCCAATGAGCATAGCAGCCGATCTCACTGCATTCACTGTGTTATGGTTAAGGGGGAGAATTTGTTGAATGGGGAATGCACGAGAAGCAAGCTATGGCTGGTGGACCTAGCAGGCAGTGAGCGAGTAGCAAAGACAGAAGTGCATGGCGATAGACTAAAGGAGACACAAAATATTAATAGGTCTCTCTCTGCACTTGGTGATGTCATATCAGCTCTTGCAACAAAAAGTTCACACATTCCTTTCAGGAACTCCAAGCTTACACACTTACTACAAGACTCATTAGGAGGAGACTCAAAGGCACTCATGTTTGTACAGATCAGTCCTAATGAAAATGATTTGAGTGAGACAATTTGCTCTCTGAACTTTGCTAGTAGAGTAAGAGGAATAGAATTGGGACCTGCAAGAAAGCAGTTAGACACTGTTGAACTTTTGAGACACAAACAAATGGTTGAGAAAGTCAAACAAGAGGTAAGGCTGAAAGATTTGCAAATCAAGAAGCTGGAGGAAACAATCCATGGATTGGAGTCCAAGATGAAGGAAAGAGACAGTAAGAACAAAAATCTCCAAGAGAAGGTCAAGGAACTGGAATCACAACTTCTGGTTGAGAGAAAGCTGGCGCGTCAACATGTAGACTCAAAGATAGCTGAACAGCACCAAATGAAACATCAAGAAGAGCAAAACAATACACTTCTGAGACCAGCACTTGCAAGTAGACCACTAGGAAGTCTCAAGAATTTCAATGATCCAGTTAGTGGTGGGTGGTTCAAAGACCAACAAATAAATTCAGCTAAACCACTCACTGAGAACAACATCTTGAAACCTCGTATACCTTTTTCTACAATGGAGAGCTCCATCAAGTGCATTGATCATGCTGAGAAAGAAAACAATCCTGACATGGCTGACAAAGCCCTACTGCCAAAAAGGCCTGGAAGAGCTTCTATCTGCATGATGACACCGCGTGTTCCTTCAGCTGTTGCTTCAAGGAGAAACTCTCTGATTCCACTCCCAAGTATACCTAGCTTAACACAGTTCCAATCACCATTATTACCAAAGTTAACAAACCAATTTGATCAGAAGGATGCCAATGGGGAATCAGAAACCAACTGTGTGCCTGCACAGACTCATTGTGAGAGTCCCAAAGAAGTTAGAAGTGGTGCTAAGAGGATTGGTAGCATACTAAGAAGAAGCCTTCACAAGAAAATACAGGTTAAGTCTCCACTTCAGCAGCACATGAGGAAGGTTGGTGTAAATGTAGGGATGGAGAAAGTTAGAGTTTCCATTGGAAGTAGGGGGAGATTGGCACCAAGGGGGCAAGTAGGATCTGGTAGAAGAGGAGGAGCTAAAGATATTCAACAAAAGAATAGTCAAAAGGAGAAGGAAAGGGGATGGATATAA
Predicted protein sequences of Glyma15g40350
>Glyma15g40350.1   sequence type=predicted peptide   gene model=Glyma15g40350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKDNNQWCLYDHDPLLLTDVSLQQESSSYTHCSSSLSQASLSSRSLAMADKPVSRGDSPSIGFSQENGRFEGNSVKFDDPIVKNVFDGRSILGYSLTSPDLVICGSPDIAGISYGDSPELLKNKHSKDVEQSMELSLEYGIKGSQVEADNGHKIPTVKFSNFCQAFEQEEELLSPEASFELLPPLVTKNESPQDLPLRDTEMLEDIGVSQEAEMESSEDTEDIGMEAKFKRLKRDFDSQRKELTETRRELGEIKRENQQKSRECQEAWNSLKELQNELMRKSMHVGSLAFAIEGQVKEKSKWFSSLRDLTRKLKIMKMEHIKLLEEAEASKKYQADMREMGLIIKSKINEQLESHEDLKSKYIEGATERKDLYNKVLELRGNIRVFCRCRPLNTDEIYAGATVALDFESAKDGDLTVMSNGAPKRTFKFDAVFGPQAEQADIFKDTAPFATSVLDGFNVCIFAYGQTGTGKTFTMEGTEEARGVNFRTLEKMFDIIKERQKLYCYDISVSVLEVYNEQIRDLLVAGNHPGTAAKRLEIRQAGEGMHHIPGLVEAHVNNMTEVWEVLQTGSNARAVSSTNSNEHSSRSHCIHCVMVKGENLLNGECTRSKLWLVDLAGSERVAKTEVHGDRLKETQNINRSLSALGDVISALATKSSHIPFRNSKLTHLLQDSLGGDSKALMFVQISPNENDLSETICSLNFASRVRGIELGPARKQLDTVELLRHKQMVEKVKQEVRLKDLQIKKLEETIHGLESKMKERDSKNKNLQEKVKELESQLLVERKLARQHVDSKIAEQHQMKHQEEQNNTLLRPALASRPLGSLKNFNDPVSGGWFKDQQINSAKPLTENNILKPRIPFSTMESSIKCIDHAEKENNPDMADKALLPKRPGRASICMMTPRVPSAVASRRNSLIPLPSIPSLTQFQSPLLPKLTNQFDQKDANGESETNCVPAQTHCESPKEVRSGAKRIGSILRRSLHKKIQVKSPLQQHMRKVGVNVGMEKVRVSIGSRGRLAPRGQVGSGRRGGAKDIQQKNSQKEKERGWI*






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