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Report for Sequence Feature Glyma15g40305

Feature Type:gene_model
Chromosome:Gm15
Start:47279168
stop:47283870
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g40305
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G78370AT Annotation by Michelle Graham. TAIR10: glutathione S-transferase TAU 20 | chr1:29484428-29485204 REVERSE LENGTH=217 SoyBaseE_val: 4.00E-28ISS
GO:0000023GO-bp Annotation by Michelle Graham. GO Biological Process: maltose metabolic process SoyBaseN/AISS
GO:0006569GO-bp Annotation by Michelle Graham. GO Biological Process: tryptophan catabolic process SoyBaseN/AISS
GO:0009407GO-bp Annotation by Michelle Graham. GO Biological Process: toxin catabolic process SoyBaseN/AISS
GO:0009684GO-bp Annotation by Michelle Graham. GO Biological Process: indoleacetic acid biosynthetic process SoyBaseN/AISS
GO:0019252GO-bp Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process SoyBaseN/AISS
GO:0043085GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of catalytic activity SoyBaseN/AISS
GO:2000030GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of response to red or far red light SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0048046GO-cc Annotation by Michelle Graham. GO Cellular Compartment: apoplast SoyBaseN/AISS
GO:0004364GO-mf Annotation by Michelle Graham. GO Molecular Function: glutathione transferase activity SoyBaseN/AISS
GO:0019899GO-mf Annotation by Michelle Graham. GO Molecular Function: enzyme binding SoyBaseN/AISS
PTHR11260Panther GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING JGI ISS
PTHR11260:SF54Panther SUBFAMILY NOT NAMED JGI ISS
PF00043PFAM Glutathione S-transferase, C-terminal domain JGI ISS
UniRef100_F8UV60UniRef Annotation by Michelle Graham. Most informative UniRef hit: Glutathione transferase n=1 Tax=Nicotiana benthamiana RepID=F8UV60_NICBE SoyBaseE_val: 2.00E-26ISS
UniRef100_UPI000233BE4AUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233BE4A related cluster n=1 Tax=unknown RepID=UPI000233BE4A SoyBaseE_val: 2.00E-53ISS

Expression Patterns of Glyma15g40305
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g40305 not represented in the dataset
Glyma15g40305 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma15g40305
ParalogEvidenceComments
Glyma08g18630 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma15g40305 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.15g252500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma15g40305
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma15g40305
>Glyma15g40305.1   sequence type=CDS   gene model=Glyma15g40305   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTAGACCCATATCTGAGTCCCTCATCATTCTTGAGTACATGCATTGATGAGGTTTGGAAGCAAGAAAAACAACTCTTCTCTGATGATCCTCACTACCGAGCCAGAGCCAGGTTTTGGATTGACTTGTTTGACAAGAAGATAGCAGATTATGGTATGAGACTCTGGGCTAGCAAGGGAGAAGACCAAGAGGCTGCAAAGAAAGAGTTTCTGGAGTGCATGAAACTCTTGGAAAATGAACTTAGAGACAAGCCTTATTTTGCTAGTGATTGTTTTGGCCTTTTGGATATAGACTTTACTACTAAAAAATAA
Predicted protein sequences of Glyma15g40305
>Glyma15g40305.1   sequence type=predicted peptide   gene model=Glyma15g40305   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVDPYLSPSSFLSTCIDEVWKQEKQLFSDDPHYRARARFWIDLFDKKIADYGMRLWASKGEDQEAAKKEFLECMKLLENELRDKPYFASDCFGLLDIDFTTKK*






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