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Integrating Genetics and Genomics to Advance Soybean Research


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Report for Sequence Feature Glyma15g40210

Feature Type:gene_model
Chromosome:Gm15
Start:47207040
stop:47207186
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma15g40210
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G78320AT Annotation by Michelle Graham. TAIR10: glutathione S-transferase TAU 23 | chr1:29467581-29468358 REVERSE LENGTH=220 SoyBaseE_val: 3.00E-22ISS
GO:0009407GO-bp Annotation by Michelle Graham. GO Biological Process: toxin catabolic process SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0004364GO-mf Annotation by Michelle Graham. GO Molecular Function: glutathione transferase activity SoyBaseN/AISS
PTHR11260Panther GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING JGI ISS
PTHR11260:SF54Panther SUBFAMILY NOT NAMED JGI ISS
PF02798PFAM Glutathione S-transferase, N-terminal domain JGI ISS
UniRef100_B9T3K4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Glutathione s-transferase, putative n=1 Tax=Ricinus communis RepID=B9T3K4_RICCO SoyBaseE_val: 1.00E-21ISS
UniRef100_I1KU84UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KU84_SOYBN SoyBaseE_val: 3.00E-22ISS

Expression Patterns of Glyma15g40210
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma15g40210 not represented in the dataset
Glyma15g40210 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma15g40210 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma15g40210
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma15g40210
>Glyma15g40210.1   sequence type=CDS   gene model=Glyma15g40210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGGGTCCGGATTGCACTAGAGGAAAAGGGCATCAAGTATGAGAATAGAGAAGAGAACCTTAGCAACAAGAGCCCTTTACTCATCCAAATGAACCCAGTTCATAAGAAAATACCAGTTCTCATCCACAATGGCAGACCCATCTGA
Predicted protein sequences of Glyma15g40210
>Glyma15g40210.1   sequence type=predicted peptide   gene model=Glyma15g40210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRVRIALEEKGIKYENREENLSNKSPLLIQMNPVHKKIPVLIHNGRPI*






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