SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G13990 | AT | Annotation by Michelle Graham. TAIR10: exocyst subunit exo70 family protein C2 | chr5:4514680-4516767 REVERSE LENGTH=695 | SoyBase | E_val: 9.00E-55 | ISS |
| GO:0006887 | GO-bp | Annotation by Michelle Graham. GO Biological Process: exocytosis | SoyBase | N/A | ISS |
| GO:0006904 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vesicle docking involved in exocytosis | SoyBase | N/A | ISS |
| GO:0009827 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plant-type cell wall modification | SoyBase | N/A | ISS |
| GO:0009860 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen tube growth | SoyBase | N/A | ISS |
| GO:0000145 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: exocyst | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| PTHR12542 | Panther | EXOCYST COMPLEX PROTEIN EXO70-RELATED | JGI | ISS | |
| PTHR12542:SF7 | Panther | EXOCYST COMPLEX PROTEIN EXO70 | JGI | ISS | |
| PF03081 | PFAM | Exo70 exocyst complex subunit | JGI | ISS | |
| UniRef100_B9S3S8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9S3S8_RICCO | SoyBase | E_val: 3.00E-59 | ISS |
| UniRef100_I1JCY6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JCY6_SOYBN | SoyBase | E_val: 4.00E-98 | ISS |
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Glyma15g40120 not represented in the dataset |
Glyma15g40120 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.15g250700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma15g40120.1 sequence type=CDS gene model=Glyma15g40120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTTACTAATAGAAAGAAACCAATAAAATGTAGTTTGCATAACCTTTTCCTTTCCAGAACAAGATTATATGTTCTTTATGATTTCGAGAGATCAGGTGAGAACAATTATCGGAAGATAATACTTGACCACGGTTCAGAAAAGAAATCAAGGTCTCCATTTAAAATTAGTCTGAAAATTCCTGCTTCGATTTTTAAAGGCAATAGGAAAAGTTTAAGGCTAGCGTGTGAATACAAAGACACTTTAGAAGAGGTGTTCAAAGAACACTCCAAAATGGAGCGTGCAAATTCAACAAGCAGGCCACACTACGAAGATTCCAAACCAAACAACAACAACAAACAAAAAGAAAATGTGTCACCTTTTGCGGCGCAGTTAATGAGGGTAATGGAGCTTCTGGACACAAATCTTGAAGGAAAAGCGAAGCTGTACAAAGAAGTACCACTAAGCCTCATATTTATGATGAGCAACAGAAGGTACATAGTTCAGAAGATAAAAGGCTCTACAGAGATCTACGAAGTGATGGGAGAAACGTGGTGTCGCAAGAGATCCATGGACCTGAGAACTTACCACAAGAACTACCAGGTTGAAACGTGGAGCAAGATTCTGAGTTCTCTTAGCCCTAAAGGTTTGAACGAGAACAGGAAGGTGCACAAGTTAGTGCTGAAGAAGCGGTTCAAGAGCTTCAACCTGACATTTGACTTGGGTGGAACGGAGAAAGAGGGTTTGAAAAGCCAGGATTCTTCTTAG
>Glyma15g40120.1 sequence type=predicted peptide gene model=Glyma15g40120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLTNRKKPIKCSLHNLFLSRTRLYVLYDFERSGENNYRKIILDHGSEKKSRSPFKISLKIPASIFKGNRKSLRLACEYKDTLEEVFKEHSKMERANSTSRPHYEDSKPNNNNKQKENVSPFAAQLMRVMELLDTNLEGKAKLYKEVPLSLIFMMSNRRYIVQKIKGSTEIYEVMGETWCRKRSMDLRTYHKNYQVETWSKILSSLSPKGLNENRKVHKLVLKKRFKSFNLTFDLGGTEKEGLKSQDSS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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